Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_013815

Experiment: starvation outgrowth control in CAAc

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	starvation outgrowth control in CAAc
3,037,049	-		TX73_013810	0.23	+0.0
3,037,060	+		TX73_013810	0.24	+0.5
3,037,065	+		TX73_013810	0.25	+0.2
3,037,065	+		TX73_013810	0.25	+0.5
3,037,065	+		TX73_013810	0.25	+0.3
3,037,065	+		TX73_013810	0.25	-0.1
3,037,065	+		TX73_013810	0.25	+1.0
3,037,073	-		TX73_013810	0.25	-0.6
3,037,073	-		TX73_013810	0.25	-0.3
3,037,073	-		TX73_013810	0.25	-0.4
3,037,073	-		TX73_013810	0.25	+0.2
3,037,073	-		TX73_013810	0.25	-0.1
3,037,092	-		TX73_013810	0.27	+1.2
3,037,104	+		TX73_013810	0.28	-0.2
3,037,104	+		TX73_013810	0.28	+0.2
3,037,105	+		TX73_013810	0.28	+0.1
3,037,111	+		TX73_013810	0.28	-0.9
3,037,115	+		TX73_013810	0.29	-0.0
3,037,123	-		TX73_013810	0.29	+0.1
3,037,140	+		TX73_013810	0.31	-0.2
3,037,215	+		TX73_013810	0.37	+1.4
3,037,223	-		TX73_013810	0.37	-0.4
3,037,259	-		TX73_013810	0.40	+0.1
3,037,282	-		TX73_013810	0.42	+0.4
3,037,300	+		TX73_013810	0.44	-0.4
3,037,318	+		TX73_013810	0.45	-0.6
3,037,318	-		TX73_013810	0.45	-0.4
3,037,318	-		TX73_013810	0.45	-0.4
3,037,323	+		TX73_013810	0.45	-0.0
3,037,377	+		TX73_013810	0.50	-0.6
3,037,380	-		TX73_013810	0.50	-0.5
3,037,395	+		TX73_013810	0.51	-0.7
3,037,395	+		TX73_013810	0.51	+1.2
3,037,412	+		TX73_013810	0.53	+0.6
3,037,420	-		TX73_013810	0.53	+0.1
3,037,438	-		TX73_013810	0.55	+0.4
3,037,445	+		TX73_013810	0.55	+0.6
3,037,455	+		TX73_013810	0.56	+1.0
3,037,461	-		TX73_013810	0.57	+0.6
3,037,464	+		TX73_013810	0.57	+0.6
3,037,464	-		TX73_013810	0.57	-1.4
3,037,477	+		TX73_013810	0.58	+0.8
3,037,498	+		TX73_013810	0.60	-0.7
3,037,498	+		TX73_013810	0.60	+1.2
3,037,504	-		TX73_013810	0.60	+1.0
3,037,507	-		TX73_013810	0.60	-0.0
3,037,557	+		TX73_013810	0.64	+0.6
3,037,583	+		TX73_013810	0.67	+0.2
3,037,591	-		TX73_013810	0.67	-0.3
3,037,596	-		TX73_013810	0.68	-0.0
3,037,598	+		TX73_013810	0.68	-0.7
3,037,606	-		TX73_013810	0.68	-0.3
3,037,606	-		TX73_013810	0.68	+0.2
3,037,636	+		TX73_013810	0.71	+1.6
3,037,644	-		TX73_013810	0.72	-0.1
3,037,650	+		TX73_013810	0.72	-1.0
3,037,664	+		TX73_013810	0.73	+0.3
3,037,664	-		TX73_013810	0.73	-1.1
3,037,695	-		TX73_013810	0.76	-1.0
3,037,709	-		TX73_013810	0.77	+0.0
3,037,709	-		TX73_013810	0.77	+0.0
3,037,719	-		TX73_013810	0.78	+0.2
3,037,748	-		TX73_013810	0.80	-0.0
3,037,750	+		TX73_013810	0.80	+0.5
3,037,784	-		TX73_013810	0.83	-0.7
3,037,807	+		TX73_013810	0.85	+0.9
3,037,816	-		TX73_013810	0.85	+0.2
3,037,816	-		TX73_013810	0.85	+0.5
3,037,889	+				+0.1
3,037,894	+				+0.5
3,037,899	+				+0.6
3,037,904	+				-0.0
3,037,926	+				+0.0
3,037,928	+				-0.7
3,037,971	-				+0.1
3,037,973	+				-0.4
3,037,986	+				+0.1
3,038,014	+				-0.1
3,038,026	+				-0.5
3,038,027	+				-0.8
3,038,027	+				-0.8
3,038,027	+				-0.6
3,038,035	-				-0.0
3,038,094	+				+0.5
3,038,102	-				-0.3
3,038,117	+				-1.2
3,038,125	-				-0.6
3,038,149	+				+0.0
3,038,157	-				+0.2
3,038,158	-				-0.4
3,038,158	-				+1.5
3,038,163	-				+0.1
3,038,165	-				-0.9
3,038,168	-				-0.0
3,038,174	+				+1.1
3,038,205	-		TX73_013815	0.11	+1.2
3,038,209	+		TX73_013815	0.11	+0.3
3,038,209	+		TX73_013815	0.11	+0.0
3,038,217	-		TX73_013815	0.11	-0.8
3,038,223	+		TX73_013815	0.12	-0.0
3,038,250	-		TX73_013815	0.13	-1.0
3,038,250	-		TX73_013815	0.13	+0.0
3,038,255	+		TX73_013815	0.14	+0.0
3,038,255	+		TX73_013815	0.14	+0.4
3,038,255	+		TX73_013815	0.14	-0.6
3,038,263	-		TX73_013815	0.14	-0.9
3,038,263	-		TX73_013815	0.14	-0.8
3,038,263	-		TX73_013815	0.14	-0.1
3,038,296	-		TX73_013815	0.16	+0.3
3,038,306	+		TX73_013815	0.17	+1.1
3,038,313	+		TX73_013815	0.18	-0.0
3,038,319	+		TX73_013815	0.18	+0.1
3,038,319	-		TX73_013815	0.18	-0.6
3,038,319	-		TX73_013815	0.18	-0.2
3,038,321	-		TX73_013815	0.18	+1.1
3,038,329	-		TX73_013815	0.19	+0.1
3,038,339	-		TX73_013815	0.19	-0.5
3,038,378	-		TX73_013815	0.22	+0.0
3,038,390	+		TX73_013815	0.23	-1.0
3,038,393	-		TX73_013815	0.23	-0.5
3,038,403	-		TX73_013815	0.23	+0.7
3,038,417	+		TX73_013815	0.24	-0.2
3,038,418	+		TX73_013815	0.24	+0.4
3,038,422	-		TX73_013815	0.25	+0.8
3,038,433	+		TX73_013815	0.25	-0.0
3,038,438	+		TX73_013815	0.26	-0.1
3,038,446	-		TX73_013815	0.26	-0.5
3,038,461	-		TX73_013815	0.27	+0.5
3,038,461	-		TX73_013815	0.27	+0.6
3,038,465	-		TX73_013815	0.27	+0.2
3,038,489	-		TX73_013815	0.29	-0.4
3,038,532	-		TX73_013815	0.32	-0.3
3,038,549	+		TX73_013815	0.33	-0.2
3,038,566	+		TX73_013815	0.34	-0.2
3,038,619	+		TX73_013815	0.38	-0.9
3,038,642	-		TX73_013815	0.39	-0.2
3,038,645	+		TX73_013815	0.39	-0.5
3,038,648	-		TX73_013815	0.39	+0.2
3,038,653	-		TX73_013815	0.40	+0.4
3,038,653	-		TX73_013815	0.40	-0.7
3,038,653	-		TX73_013815	0.40	-0.3
3,038,658	-		TX73_013815	0.40	+0.6
3,038,668	-		TX73_013815	0.41	-0.5
3,038,668	-		TX73_013815	0.41	+0.6
3,038,668	-		TX73_013815	0.41	-0.4
3,038,679	+		TX73_013815	0.41	-1.1
3,038,684	+		TX73_013815	0.42	-0.1
3,038,694	-		TX73_013815	0.42	-0.6
3,038,699	-		TX73_013815	0.43	+0.9
3,038,704	-		TX73_013815	0.43	-0.6
3,038,717	+		TX73_013815	0.44	+0.7
3,038,717	+		TX73_013815	0.44	-0.8
3,038,717	+		TX73_013815	0.44	-0.2
3,038,717	+		TX73_013815	0.44	+0.2
3,038,723	-		TX73_013815	0.44	+1.6
3,038,725	-		TX73_013815	0.44	-0.4
3,038,725	-		TX73_013815	0.44	+0.3
3,038,738	+		TX73_013815	0.45	+1.0
3,038,738	+		TX73_013815	0.45	-1.0
3,038,738	+		TX73_013815	0.45	+1.0
3,038,738	+		TX73_013815	0.45	-0.2
3,038,746	-		TX73_013815	0.46	-1.2
3,038,746	-		TX73_013815	0.46	-0.4
3,038,746	-		TX73_013815	0.46	-0.5
3,038,746	-		TX73_013815	0.46	-0.7
3,038,746	-		TX73_013815	0.46	-0.4
3,038,760	-		TX73_013815	0.47	-0.1
3,038,765	-		TX73_013815	0.47	-0.2
3,038,770	-		TX73_013815	0.47	-1.2
3,038,772	+		TX73_013815	0.47	-0.9
3,038,777	+		TX73_013815	0.48	+0.6
3,038,777	+		TX73_013815	0.48	-1.4
3,038,780	-		TX73_013815	0.48	-0.3
3,038,793	+		TX73_013815	0.49	-0.7
3,038,793	+		TX73_013815	0.49	-0.5
3,038,793	+		TX73_013815	0.49	-0.8
3,038,801	-		TX73_013815	0.49	-1.5
3,038,801	-		TX73_013815	0.49	-0.5
3,038,801	-		TX73_013815	0.49	+0.1
3,038,801	-		TX73_013815	0.49	+0.4
3,038,815	+		TX73_013815	0.50	+0.7
3,038,815	+		TX73_013815	0.50	-1.0
3,038,815	+		TX73_013815	0.50	+0.2
3,038,817	-		TX73_013815	0.50	-0.0
3,038,884	-		TX73_013815	0.55	+0.5
3,038,932	-		TX73_013815	0.58	-0.1
3,038,945	+		TX73_013815	0.59	-1.0
3,038,945	+		TX73_013815	0.59	-0.2
3,038,953	-		TX73_013815	0.59	-0.0
3,038,953	-		TX73_013815	0.59	-1.3
3,038,953	-		TX73_013815	0.59	+1.1
3,038,984	+		TX73_013815	0.61	-1.1
3,038,992	-		TX73_013815	0.62	-0.2
3,038,993	-		TX73_013815	0.62	+1.3
3,039,033	+		TX73_013815	0.64	-0.2
3,039,080	+		TX73_013815	0.68	-0.0
3,039,081	+		TX73_013815	0.68	-0.9
3,039,103	+		TX73_013815	0.69	-0.0
3,039,103	+		TX73_013815	0.69	-0.3
3,039,117	-		TX73_013815	0.70	-0.2
3,039,117	-		TX73_013815	0.70	+0.8
3,039,172	+		TX73_013815	0.74	-1.3
3,039,191	+		TX73_013815	0.75	-0.2
3,039,191	+		TX73_013815	0.75	+0.5
3,039,199	-		TX73_013815	0.75	-0.0
3,039,199	-		TX73_013815	0.75	+0.2
3,039,199	-		TX73_013815	0.75	-0.5
3,039,199	-		TX73_013815	0.75	-0.1
3,039,208	-		TX73_013815	0.76	-0.7
3,039,238	+		TX73_013815	0.78	-1.0
3,039,246	-		TX73_013815	0.78	-0.9
3,039,279	-		TX73_013815	0.80	+1.0
3,039,280	+		TX73_013815	0.81	-0.1
3,039,433	+				-0.2
3,039,451	-				+0.7
3,039,469	+				-1.3
3,039,529	-				-0.3
3,039,530	-				+0.6
3,039,532	+				-0.2
3,039,556	+				-0.5
3,039,561	+				+0.4
3,039,562	+				-0.1
3,039,570	-				+0.4
3,039,576	+				-0.2
3,039,581	-				+0.0
3,039,594	-				+1.3
3,039,594	-				+0.1
3,039,594	-				-0.1
3,039,594	-				+0.2
3,039,665	-				-0.2
3,039,682	-				+0.1
3,039,709	+				+0.7
3,039,717	-				-0.7
3,039,720	-				-1.0
3,039,722	+				+0.1
3,039,722	+				-0.8
3,039,730	-				+0.7
3,039,755	-				+0.0
3,039,764	+				-1.7
3,039,907	+		TX73_013820	0.17	+0.9
3,039,940	-		TX73_013820	0.19	+0.3
3,039,949	+		TX73_013820	0.19	+0.2
3,039,967	-		TX73_013820	0.20	+0.2
3,039,972	-		TX73_013820	0.21	+0.7
3,039,986	-		TX73_013820	0.21	-1.4
3,040,002	+		TX73_013820	0.22	+0.0
3,040,027	-		TX73_013820	0.24	-0.7
3,040,029	-		TX73_013820	0.24	-0.7
3,040,034	-		TX73_013820	0.24	-1.4
3,040,041	-		TX73_013820	0.24	+0.5
3,040,070	+		TX73_013820	0.26	+0.7
3,040,080	+		TX73_013820	0.26	+1.0
3,040,080	+		TX73_013820	0.26	-0.2
3,040,088	-		TX73_013820	0.27	+0.9
3,040,095	+		TX73_013820	0.27	-1.3
3,040,114	+		TX73_013820	0.28	+0.4
3,040,114	+		TX73_013820	0.28	-0.1
3,040,114	+		TX73_013820	0.28	+1.2
3,040,122	-		TX73_013820	0.29	+0.2
3,040,171	+		TX73_013820	0.31	+0.7
3,040,176	+		TX73_013820	0.32	+1.2
3,040,179	-		TX73_013820	0.32	-0.1
3,040,191	+		TX73_013820	0.32	+1.2
3,040,191	+		TX73_013820	0.32	-0.2
3,040,256	+		TX73_013820	0.36	+0.3
3,040,300	+		TX73_013820	0.38	-0.1
3,040,300	+		TX73_013820	0.38	+0.3
3,040,300	+		TX73_013820	0.38	+2.4
3,040,395	+		TX73_013820	0.43	-0.6
3,040,402	-		TX73_013820	0.44	+0.9
3,040,470	+		TX73_013820	0.47	+0.9
3,040,470	+		TX73_013820	0.47	+0.5
3,040,478	-		TX73_013820	0.48	+0.2
3,040,478	-		TX73_013820	0.48	-0.7
3,040,493	-		TX73_013820	0.48	-0.6
3,040,493	-		TX73_013820	0.48	-0.5
3,040,493	-		TX73_013820	0.48	-0.3
3,040,525	+		TX73_013820	0.50	+0.7
3,040,531	+		TX73_013820	0.50	+0.3
3,040,531	+		TX73_013820	0.50	-0.8
3,040,539	-		TX73_013820	0.51	+0.9
3,040,551	+		TX73_013820	0.51	-0.1
3,040,576	+		TX73_013820	0.53	-0.3