Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_009315

Experiment: starvation outgrowth control in CAAc

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	starvation outgrowth control in CAAc
2,037,193	+		TX73_009310	0.50	+0.1
2,037,198	+		TX73_009310	0.50	-0.4
2,037,201	-		TX73_009310	0.50	+0.1
2,037,206	-		TX73_009310	0.50	+0.9
2,037,220	-		TX73_009310	0.51	-0.8
2,037,248	-		TX73_009310	0.53	+0.7
2,037,271	+		TX73_009310	0.55	-0.3
2,037,280	-		TX73_009310	0.56	+0.6
2,037,314	+		TX73_009310	0.58	+0.9
2,037,329	+		TX73_009310	0.59	+1.3
2,037,351	-		TX73_009310	0.61	+0.9
2,037,362	-		TX73_009310	0.61	-0.4
2,037,373	-		TX73_009310	0.62	+0.0
2,037,412	+		TX73_009310	0.65	+0.4
2,037,417	+		TX73_009310	0.65	-1.0
2,037,438	+		TX73_009310	0.67	-0.3
2,037,446	-		TX73_009310	0.67	+0.0
2,037,478	+		TX73_009310	0.70	-0.1
2,037,478	+		TX73_009310	0.70	-0.5
2,037,478	+		TX73_009310	0.70	-0.1
2,037,481	-		TX73_009310	0.70	+0.1
2,037,510	-		TX73_009310	0.72	-0.0
2,037,510	-		TX73_009310	0.72	+0.0
2,037,550	+		TX73_009310	0.75	+0.4
2,037,552	+		TX73_009310	0.75	-0.1
2,037,558	-		TX73_009310	0.75	-0.1
2,037,560	+		TX73_009310	0.75	-0.7
2,037,586	+		TX73_009310	0.77	+0.5
2,037,601	+		TX73_009310	0.78	+0.5
2,037,601	+		TX73_009310	0.78	-0.0
2,037,619	-		TX73_009310	0.80	-0.3
2,037,698	+		TX73_009310	0.85	-0.2
2,037,716	-		TX73_009310	0.86	-1.2
2,037,745	-		TX73_009310	0.88	-0.2
2,037,769	+				-1.1
2,037,769	+				-1.2
2,037,769	+				-0.0
2,037,769	+				-0.3
2,037,769	+				+0.0
2,037,769	+				-0.7
2,037,769	+				+0.9
2,037,772	-				-0.6
2,037,777	-				-0.2
2,037,777	-				-0.6
2,037,777	-				-0.9
2,037,777	-				+0.9
2,037,777	-				-0.2
2,037,777	-				+0.1
2,037,777	-				-0.5
2,037,849	+				-0.2
2,037,849	+				-0.5
2,037,857	-				-0.4
2,037,899	+				-0.1
2,037,912	+				+0.0
2,037,920	-				-0.7
2,037,922	+				-0.6
2,037,922	+				-0.3
2,037,924	+				+1.0
2,037,930	+				-0.2
2,037,930	-				+0.2
2,037,930	-				-0.1
2,037,930	-				+0.9
2,037,937	+				-0.0
2,037,957	+				+0.2
2,037,970	-				+0.1
2,037,972	+				+0.4
2,037,985	-				-0.4
2,037,997	-				-0.4
2,038,019	-				-0.2
2,038,019	-				+0.1
2,038,024	-				-0.1
2,038,027	-				+1.6
2,038,029	-				-0.5
2,038,058	+				+0.2
2,038,066	-				-0.3
2,038,078	-				-0.1
2,038,085	+				+0.0
2,038,150	+				-0.0
2,038,158	-				+1.0
2,038,164	-				-0.1
2,038,167	+				-0.1
2,038,167	+				-1.0
2,038,175	-				-0.0
2,038,177	-				+0.4
2,038,189	-		TX73_009315	0.11	-0.6
2,038,200	+		TX73_009315	0.12	-0.1
2,038,240	+		TX73_009315	0.17	-0.4
2,038,286	-		TX73_009315	0.23	-1.4
2,038,318	+		TX73_009315	0.27	-2.7
2,038,361	-		TX73_009315	0.33	+0.6
2,038,361	-		TX73_009315	0.33	-0.3
2,038,361	-		TX73_009315	0.33	+0.1
2,038,392	-		TX73_009315	0.37	+0.4
2,038,402	+		TX73_009315	0.38	-0.1
2,038,407	-		TX73_009315	0.38	-0.1
2,038,417	+		TX73_009315	0.40	-0.8
2,038,417	+		TX73_009315	0.40	-1.3
2,038,418	+		TX73_009315	0.40	+0.1
2,038,430	-		TX73_009315	0.41	-2.0
2,038,440	+		TX73_009315	0.43	-0.1
2,038,448	-		TX73_009315	0.44	-1.3
2,038,479	-		TX73_009315	0.48	-1.4
2,038,486	+		TX73_009315	0.49	+2.5
2,038,603	-		TX73_009315	0.64	-0.6
2,038,616	+		TX73_009315	0.65	-0.0
2,038,616	+		TX73_009315	0.65	-0.4
2,038,624	-		TX73_009315	0.66	-0.3
2,038,671	-		TX73_009315	0.72	+0.4
2,038,679	+		TX73_009315	0.73	-0.7
2,038,698	+		TX73_009315	0.76	+0.3
2,038,722	+		TX73_009315	0.79	-0.5
2,038,735	-		TX73_009315	0.81	-0.2
2,038,758	-		TX73_009315	0.83	-0.9
2,038,836	-				+0.4
2,038,902	-				-0.3
2,038,915	+				-1.4
2,038,947	+				+0.7
2,038,954	+				-0.3
2,038,962	-				+0.4
2,038,967	+				-0.3
2,038,982	+				-0.3
2,038,982	+				+0.4
2,038,997	+				-0.1
2,039,002	+				+0.3
2,039,003	+				-0.5
2,039,009	-				-0.6
2,039,011	-				-0.1
2,039,011	-				-0.1
2,039,011	-				+0.3
2,039,025	+				-0.3
2,039,033	-				-0.2
2,039,049	+		TX73_009320	0.11	+0.0
2,039,051	-		TX73_009320	0.11	+1.3
2,039,052	-		TX73_009320	0.11	-0.0
2,039,052	-		TX73_009320	0.11	-0.4
2,039,054	+		TX73_009320	0.11	-0.3
2,039,062	+		TX73_009320	0.12	-0.2
2,039,062	-		TX73_009320	0.12	+0.5
2,039,082	+		TX73_009320	0.15	-0.4
2,039,082	+		TX73_009320	0.15	+1.6
2,039,090	-		TX73_009320	0.16	+1.0
2,039,113	+		TX73_009320	0.19	+0.7
2,039,115	-		TX73_009320	0.20	-0.9
2,039,121	-		TX73_009320	0.20	+0.7
2,039,136	-		TX73_009320	0.22	+2.9
2,039,207	-		TX73_009320	0.32	+0.1
2,039,232	-		TX73_009320	0.36	-1.1
2,039,252	+		TX73_009320	0.38	-0.5
2,039,252	+		TX73_009320	0.38	+0.1
2,039,260	-		TX73_009320	0.39	+0.1
2,039,276	-		TX73_009320	0.41	-0.7
2,039,292	+		TX73_009320	0.44	-0.6
2,039,294	-		TX73_009320	0.44	+0.6
2,039,297	+		TX73_009320	0.44	-1.4
2,039,297	+		TX73_009320	0.44	-0.0
2,039,305	-		TX73_009320	0.45	-1.3
2,039,305	-		TX73_009320	0.45	-0.4
2,039,315	-		TX73_009320	0.47	-1.7
2,039,329	-		TX73_009320	0.49	-0.4
2,039,336	-		TX73_009320	0.50	+0.0
2,039,351	+		TX73_009320	0.52	+0.8
2,039,351	+		TX73_009320	0.52	+0.9
2,039,380	+		TX73_009320	0.56	+0.1
2,039,391	+		TX73_009320	0.57	-0.1
2,039,399	-		TX73_009320	0.58	-0.3
2,039,445	+		TX73_009320	0.64	-0.4
2,039,453	+		TX73_009320	0.65	-1.3
2,039,453	-		TX73_009320	0.65	+1.2
2,039,453	-		TX73_009320	0.65	+0.8
2,039,455	+		TX73_009320	0.66	+0.3
2,039,455	+		TX73_009320	0.66	+2.6
2,039,468	-		TX73_009320	0.67	-0.3
2,039,485	+		TX73_009320	0.70	-0.3
2,039,498	-		TX73_009320	0.72	-0.2
2,039,505	+		TX73_009320	0.72	+0.3
2,039,507	-		TX73_009320	0.73	-0.3
2,039,513	-		TX73_009320	0.74	+0.0
2,039,515	+		TX73_009320	0.74	-0.3
2,039,515	+		TX73_009320	0.74	+0.0
2,039,520	+		TX73_009320	0.75	+0.8
2,039,523	-		TX73_009320	0.75	-0.1
2,039,523	-		TX73_009320	0.75	-0.2
2,039,528	-		TX73_009320	0.76	-0.6
2,039,528	-		TX73_009320	0.76	+0.1
2,039,528	-		TX73_009320	0.76	+1.1
2,039,543	-		TX73_009320	0.78	-1.3
2,039,543	-		TX73_009320	0.78	+0.5
2,039,608	-		TX73_009320	0.86	+0.3
2,039,661	-				+0.9
2,039,661	-				+0.2
2,039,662	-				-0.8
2,039,667	+				-0.2
2,039,672	+				+0.1
2,039,672	+				+0.7
2,039,675	-				+0.3
2,039,679	+				-0.0
2,039,680	-				+0.1
2,039,680	-				-0.3
2,039,680	-				-0.5
2,039,694	+				+0.3
2,039,757	+				+0.8
2,039,803	+				-0.5
2,039,803	+				-1.3
2,039,803	+				+0.3
2,039,803	+				+0.3
2,039,803	+				-0.5
2,039,803	+				-0.6
2,039,811	-				-0.6
2,039,811	-				+0.2
2,039,811	-				-1.1
2,039,811	-				+0.7
2,039,811	-				-0.1
2,039,815	+				-0.0
2,039,823	-				+0.2
2,039,877	-				+0.0