Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_015720

Experiment: starvation outgrowth control in CAAc

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	starvation outgrowth control in CAAc
3,436,019	-				-0.5
3,436,032	+				-0.9
3,436,036	-				+0.2
3,436,064	-				+0.2
3,436,093	+				+0.1
3,436,101	+				+0.1
3,436,174	+				-0.3
3,436,208	-				+1.2
3,436,226	-				-0.2
3,436,228	+				+0.7
3,436,236	-				+0.2
3,436,323	+				-1.8
3,436,387	-		TX73_015715	0.17	-0.3
3,436,397	-		TX73_015715	0.19	-1.1
3,436,406	+		TX73_015715	0.21	-0.3
3,436,414	-		TX73_015715	0.22	+0.4
3,436,490	-		TX73_015715	0.36	-0.5
3,436,511	-		TX73_015715	0.40	-1.1
3,436,524	+		TX73_015715	0.42	-0.1
3,436,527	-		TX73_015715	0.43	-1.1
3,436,529	+		TX73_015715	0.43	-0.3
3,436,529	+		TX73_015715	0.43	-0.8
3,436,537	-		TX73_015715	0.45	-0.6
3,436,558	-		TX73_015715	0.49	-0.7
3,436,572	+		TX73_015715	0.51	+0.7
3,436,578	+		TX73_015715	0.52	+2.2
3,436,589	+		TX73_015715	0.54	-0.4
3,436,589	+		TX73_015715	0.54	+0.2
3,436,589	+		TX73_015715	0.54	-0.0
3,436,589	+		TX73_015715	0.54	+0.5
3,436,589	+		TX73_015715	0.54	+0.5
3,436,589	+		TX73_015715	0.54	-1.0
3,436,589	+		TX73_015715	0.54	-0.0
3,436,590	+		TX73_015715	0.54	-1.0
3,436,590	-		TX73_015715	0.54	-0.9
3,436,597	-		TX73_015715	0.56	-0.9
3,436,597	-		TX73_015715	0.56	-0.2
3,436,597	-		TX73_015715	0.56	-1.8
3,436,597	-		TX73_015715	0.56	+0.4
3,436,597	-		TX73_015715	0.56	+0.3
3,436,597	-		TX73_015715	0.56	-0.5
3,436,598	-		TX73_015715	0.56	+0.1
3,436,599	-		TX73_015715	0.56	+0.5
3,436,603	-		TX73_015715	0.57	-1.4
3,436,634	+		TX73_015715	0.62	+1.8
3,436,634	+		TX73_015715	0.62	-0.9
3,436,634	+		TX73_015715	0.62	-1.4
3,436,634	+		TX73_015715	0.62	-1.2
3,436,642	-		TX73_015715	0.64	-1.4
3,436,642	-		TX73_015715	0.64	-0.8
3,436,642	-		TX73_015715	0.64	-0.4
3,436,691	+		TX73_015715	0.73	+0.2
3,436,693	+		TX73_015715	0.73	-1.2
3,436,722	+		TX73_015715	0.79	+0.2
3,436,722	+		TX73_015715	0.79	+0.1
3,436,751	+		TX73_015715	0.84	+2.8
3,436,751	-		TX73_015715	0.84	-0.2
3,436,763	+		TX73_015715	0.86	-0.3
3,436,770	-		TX73_015715	0.87	+0.1
3,436,771	-		TX73_015715	0.87	-0.1
3,436,771	-		TX73_015715	0.87	-0.9
3,436,772	+		TX73_015715	0.88	-0.2
3,436,818	+				-1.1
3,436,859	+				+0.4
3,436,862	-				-0.5
3,436,872	+				-0.1
3,436,872	+				-0.2
3,436,880	-				+0.2
3,436,888	+				+0.1
3,436,888	-				+0.6
3,436,903	+				-0.1
3,436,920	+				+0.4
3,436,927	-				+0.6
3,436,929	+				-0.0
3,436,967	+				-0.3
3,436,967	-				-1.6
3,437,083	+				-0.1
3,437,102	-				+0.4
3,437,130	-				+0.7
3,437,137	-				-0.6
3,437,140	-				+0.4
3,437,165	+				+1.0
3,437,174	+				+0.1
3,437,180	+				+0.7
3,437,187	-		TX73_015720	0.10	+0.5
3,437,187	-		TX73_015720	0.10	+0.3
3,437,224	-		TX73_015720	0.13	+1.2
3,437,242	+		TX73_015720	0.14	+0.3
3,437,248	-		TX73_015720	0.14	-0.4
3,437,261	+		TX73_015720	0.15	+1.2
3,437,313	-		TX73_015720	0.18	+1.2
3,437,320	+		TX73_015720	0.19	+1.4
3,437,328	-		TX73_015720	0.19	-0.1
3,437,328	-		TX73_015720	0.19	+0.4
3,437,349	-		TX73_015720	0.20	-0.2
3,437,354	-		TX73_015720	0.21	+0.3
3,437,408	-		TX73_015720	0.24	+1.4
3,437,427	+		TX73_015720	0.25	+0.6
3,437,428	-		TX73_015720	0.25	+0.2
3,437,435	-		TX73_015720	0.26	+0.1
3,437,449	-		TX73_015720	0.27	+0.4
3,437,481	+		TX73_015720	0.29	+0.0
3,437,496	+		TX73_015720	0.30	+0.4
3,437,501	+		TX73_015720	0.30	+0.3
3,437,501	+		TX73_015720	0.30	+0.3
3,437,503	+		TX73_015720	0.30	+0.4
3,437,509	-		TX73_015720	0.30	-0.3
3,437,509	-		TX73_015720	0.30	-0.3
3,437,509	-		TX73_015720	0.30	+0.9
3,437,553	+		TX73_015720	0.33	+0.3
3,437,553	-		TX73_015720	0.33	+0.4
3,437,560	-		TX73_015720	0.34	+0.2
3,437,571	+		TX73_015720	0.34	-0.4
3,437,571	+		TX73_015720	0.34	-0.0
3,437,572	-		TX73_015720	0.34	+0.7
3,437,586	-		TX73_015720	0.35	-0.2
3,437,615	-		TX73_015720	0.37	+0.2
3,437,621	-		TX73_015720	0.37	-0.4
3,437,621	-		TX73_015720	0.37	+1.4
3,437,675	+		TX73_015720	0.41	+1.2
3,437,680	+		TX73_015720	0.41	+0.3
3,437,680	+		TX73_015720	0.41	+1.2
3,437,683	-		TX73_015720	0.41	+0.2
3,437,698	+		TX73_015720	0.42	-0.7
3,437,804	-		TX73_015720	0.49	+0.7
3,437,804	-		TX73_015720	0.49	+0.8
3,437,836	+		TX73_015720	0.51	+0.7
3,437,836	+		TX73_015720	0.51	+0.5
3,437,836	+		TX73_015720	0.51	+0.2
3,437,836	+		TX73_015720	0.51	+0.1
3,437,844	-		TX73_015720	0.51	+0.4
3,437,844	-		TX73_015720	0.51	-0.7
3,437,912	+		TX73_015720	0.55	-0.4
3,437,949	-		TX73_015720	0.58	-0.3
3,437,974	-		TX73_015720	0.59	-1.7
3,437,974	-		TX73_015720	0.59	-0.4
3,437,984	+		TX73_015720	0.60	-0.7
3,437,984	+		TX73_015720	0.60	+0.7
3,438,019	-		TX73_015720	0.62	+0.2
3,438,019	-		TX73_015720	0.62	+1.2
3,438,058	-		TX73_015720	0.64	-0.2
3,438,058	-		TX73_015720	0.64	+0.3
3,438,061	+		TX73_015720	0.65	-0.1
3,438,068	+		TX73_015720	0.65	+0.1
3,438,068	+		TX73_015720	0.65	+0.1
3,438,068	+		TX73_015720	0.65	+0.5
3,438,068	+		TX73_015720	0.65	+0.8
3,438,071	-		TX73_015720	0.65	-0.4
3,438,076	-		TX73_015720	0.65	+0.8
3,438,089	-		TX73_015720	0.66	+0.4
3,438,118	+		TX73_015720	0.68	+0.7
3,438,118	+		TX73_015720	0.68	-0.5
3,438,126	-		TX73_015720	0.69	+0.3
3,438,131	+		TX73_015720	0.69	+0.2
3,438,138	+		TX73_015720	0.69	+2.1
3,438,138	+		TX73_015720	0.69	-0.9
3,438,139	-		TX73_015720	0.69	+1.6
3,438,146	-		TX73_015720	0.70	-0.3
3,438,210	+		TX73_015720	0.74	+0.8
3,438,237	-		TX73_015720	0.75	+0.6
3,438,244	-		TX73_015720	0.76	+1.6
3,438,259	-		TX73_015720	0.77	+0.5
3,438,269	-		TX73_015720	0.77	+0.0
3,438,272	-		TX73_015720	0.78	+0.6
3,438,283	-		TX73_015720	0.78	+1.1
3,438,293	-		TX73_015720	0.79	-0.4
3,438,299	-		TX73_015720	0.79	-2.5
3,438,321	-		TX73_015720	0.81	+0.9
3,438,341	+		TX73_015720	0.82	-0.4
3,438,342	+		TX73_015720	0.82	+0.4
3,438,345	-		TX73_015720	0.82	+0.1
3,438,349	-		TX73_015720	0.82	+0.4
3,438,349	-		TX73_015720	0.82	+0.2
3,438,353	+		TX73_015720	0.83	-0.4
3,438,358	+		TX73_015720	0.83	+0.8
3,438,358	+		TX73_015720	0.83	-0.8
3,438,366	-		TX73_015720	0.83	-0.8
3,438,428	+		TX73_015720	0.87	-0.9
3,438,502	+				+0.5
3,438,505	-				-1.9
3,438,518	+				+0.4
3,438,525	-				-0.0
3,438,542	+				-0.7
3,438,545	-				-0.0
3,438,560	+				+0.3
3,438,564	-				+0.1
3,438,568	-				+0.7
3,438,570	+				+0.3
3,438,573	-				+0.3
3,438,575	+				+0.6
3,438,578	-				-1.0
3,438,610	+				-0.3
3,438,617	-				+0.4
3,438,624	-				+3.5
3,438,626	+				+0.4
3,438,631	+				+0.9
3,438,634	+				+0.4
3,438,697	+				+0.7
3,438,702	+				-0.1
3,438,702	+				+0.3
3,438,703	+				+0.3
3,438,705	-				+0.0
3,438,709	+				-2.1
3,438,715	+				+0.1
3,438,768	+				-2.4
3,438,809	-				+1.1
3,438,816	+				+0.3
3,438,816	+				+0.2
3,438,821	+				-0.1
3,438,828	+				-0.4
3,438,837	+				+0.3
3,438,847	+				-0.4
3,438,882	+		TX73_015725	0.10	+0.6
3,438,882	+		TX73_015725	0.10	-0.3
3,438,890	-		TX73_015725	0.11	-0.8
3,438,900	-		TX73_015725	0.12	-0.5
3,438,900	-		TX73_015725	0.12	-0.2
3,438,918	-		TX73_015725	0.14	-0.2
3,438,936	-		TX73_015725	0.16	-1.1
3,438,938	+		TX73_015725	0.16	-0.7
3,438,949	+		TX73_015725	0.17	+0.5
3,438,951	-		TX73_015725	0.18	-0.1
3,438,951	-		TX73_015725	0.18	+0.6
3,438,957	-		TX73_015725	0.18	+0.1
3,438,958	+		TX73_015725	0.18	+0.3
3,438,983	+		TX73_015725	0.21	+0.7
3,438,986	-		TX73_015725	0.21	-0.1
3,439,013	-		TX73_015725	0.24	+0.5
3,439,029	+		TX73_015725	0.26	-0.3
3,439,067	-		TX73_015725	0.30	+0.4
3,439,069	-		TX73_015725	0.30	+0.0
3,439,078	+		TX73_015725	0.31	+0.9
3,439,086	-		TX73_015725	0.32	+0.8
3,439,104	+		TX73_015725	0.34	-0.0
3,439,106	+		TX73_015725	0.34	-0.1
3,439,160	+		TX73_015725	0.40	-0.3
3,439,175	-		TX73_015725	0.41	+0.9
3,439,213	+		TX73_015725	0.45	-0.4
3,439,213	+		TX73_015725	0.45	-0.7
3,439,213	+		TX73_015725	0.45	-0.1
3,439,221	-		TX73_015725	0.46	-0.0
3,439,274	+		TX73_015725	0.52	+0.2
3,439,282	-		TX73_015725	0.53	+0.2
3,439,282	-		TX73_015725	0.53	+0.7
3,439,295	+		TX73_015725	0.54	-0.2
3,439,356	+		TX73_015725	0.61	-0.5
3,439,359	-		TX73_015725	0.61	-0.1
3,439,364	-		TX73_015725	0.62	+1.2
3,439,364	-		TX73_015725	0.62	-0.9
3,439,369	-		TX73_015725	0.62	+0.8
3,439,392	-		TX73_015725	0.65	-0.1
3,439,404	-		TX73_015725	0.66	+0.3
3,439,438	+		TX73_015725	0.69	-0.9
3,439,438	+		TX73_015725	0.69	+0.3
3,439,453	+		TX73_015725	0.71	+0.7
3,439,455	+		TX73_015725	0.71	-0.6
3,439,472	-		TX73_015725	0.73	-1.0
3,439,480	-		TX73_015725	0.74	-0.5
3,439,507	-		TX73_015725	0.77	+1.9
3,439,520	-		TX73_015725	0.78	+0.3
3,439,533	-		TX73_015725	0.80	-0.4
3,439,542	+		TX73_015725	0.81	+0.3
3,439,586	+		TX73_015725	0.85	-0.3
3,439,629	+		TX73_015725	0.90	+0.2