Experiment: starvation outgrowth control in CAAc
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt TX73_024185 and TX73_024190 are separated by 76 nucleotides TX73_024190 and TX73_024195 are separated by 235 nucleotides TX73_024195 and TX73_024200 are separated by 73 nucleotides
TX73_024185: TX73_024185 - oxidoreductase, at 5,244,362 to 5,245,348
_024185
TX73_024190: TX73_024190 - GNAT family N-acetyltransferase, at 5,245,425 to 5,245,928
_024190
TX73_024195: TX73_024195 - 5S ribosomal RNA, at 5,246,164 to 5,246,278
_024195
TX73_024200: TX73_024200 - 23S ribosomal RNA, at 5,246,352 to 5,249,168
_024200
Position (kb) 5245
5246 Strain fitness (log2 ratio) -2
-1
0
1 at 5244.501 kb on + strand, within TX73_024185 at 5244.687 kb on - strand, within TX73_024185 at 5244.712 kb on + strand, within TX73_024185 at 5244.744 kb on + strand, within TX73_024185 at 5244.749 kb on + strand, within TX73_024185 at 5244.749 kb on + strand, within TX73_024185 at 5244.752 kb on - strand, within TX73_024185 at 5244.794 kb on + strand, within TX73_024185 at 5244.851 kb on - strand, within TX73_024185 at 5244.903 kb on - strand, within TX73_024185 at 5244.914 kb on + strand, within TX73_024185 at 5244.914 kb on + strand, within TX73_024185 at 5245.011 kb on - strand, within TX73_024185 at 5245.019 kb on + strand, within TX73_024185 at 5245.026 kb on + strand, within TX73_024185 at 5245.120 kb on - strand, within TX73_024185 at 5245.149 kb on + strand, within TX73_024185 at 5245.151 kb on + strand, within TX73_024185 at 5245.157 kb on - strand, within TX73_024185 at 5245.168 kb on + strand, within TX73_024185 at 5245.244 kb on - strand, within TX73_024185 at 5245.244 kb on - strand, within TX73_024185 at 5245.246 kb on + strand, within TX73_024185 at 5245.254 kb on - strand at 5245.272 kb on - strand at 5245.301 kb on - strand at 5245.316 kb on + strand at 5245.331 kb on - strand at 5245.358 kb on + strand at 5245.420 kb on + strand at 5245.425 kb on + strand at 5245.425 kb on + strand at 5245.435 kb on + strand at 5245.438 kb on - strand at 5245.471 kb on - strand at 5245.471 kb on - strand at 5245.522 kb on + strand, within TX73_024190 at 5245.537 kb on + strand, within TX73_024190 at 5245.558 kb on - strand, within TX73_024190 at 5245.564 kb on - strand, within TX73_024190 at 5245.567 kb on + strand, within TX73_024190 at 5245.642 kb on + strand, within TX73_024190 at 5245.652 kb on - strand, within TX73_024190 at 5245.670 kb on + strand, within TX73_024190 at 5245.707 kb on - strand, within TX73_024190 at 5245.721 kb on + strand, within TX73_024190 at 5245.721 kb on + strand, within TX73_024190 at 5245.731 kb on - strand, within TX73_024190 at 5245.753 kb on + strand, within TX73_024190 at 5245.761 kb on - strand, within TX73_024190 at 5245.768 kb on - strand, within TX73_024190 at 5245.768 kb on - strand, within TX73_024190 at 5245.806 kb on + strand, within TX73_024190 at 5245.821 kb on - strand, within TX73_024190 at 5245.880 kb on + strand at 5245.922 kb on + strand at 5245.997 kb on + strand at 5246.003 kb on + strand at 5246.026 kb on + strand at 5246.055 kb on - strand at 5246.055 kb on - strand at 5246.068 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction starvation outgrowth control in CAAc remove 5,244,501 + TX73_024185 0.14 +0.8 5,244,687 - TX73_024185 0.33 -1.5 5,244,712 + TX73_024185 0.35 -0.9 5,244,744 + TX73_024185 0.39 -0.4 5,244,749 + TX73_024185 0.39 +0.3 5,244,749 + TX73_024185 0.39 +0.2 5,244,752 - TX73_024185 0.40 -0.2 5,244,794 + TX73_024185 0.44 -0.9 5,244,851 - TX73_024185 0.50 +0.0 5,244,903 - TX73_024185 0.55 -1.1 5,244,914 + TX73_024185 0.56 -0.4 5,244,914 + TX73_024185 0.56 +1.0 5,245,011 - TX73_024185 0.66 -1.4 5,245,019 + TX73_024185 0.67 +0.3 5,245,026 + TX73_024185 0.67 -1.6 5,245,120 - TX73_024185 0.77 -0.0 5,245,149 + TX73_024185 0.80 -0.5 5,245,151 + TX73_024185 0.80 -0.3 5,245,157 - TX73_024185 0.81 +0.0 5,245,168 + TX73_024185 0.82 -0.1 5,245,244 - TX73_024185 0.89 -0.3 5,245,244 - TX73_024185 0.89 -0.1 5,245,246 + TX73_024185 0.90 +0.0 5,245,254 - -0.2 5,245,272 - +0.4 5,245,301 - +0.3 5,245,316 + -0.3 5,245,331 - +0.1 5,245,358 + +0.4 5,245,420 + -0.0 5,245,425 + +0.6 5,245,425 + -0.4 5,245,435 + -0.7 5,245,438 - -0.1 5,245,471 - -0.6 5,245,471 - +0.1 5,245,522 + TX73_024190 0.19 +0.3 5,245,537 + TX73_024190 0.22 -0.2 5,245,558 - TX73_024190 0.26 -2.0 5,245,564 - TX73_024190 0.28 +0.8 5,245,567 + TX73_024190 0.28 -0.1 5,245,642 + TX73_024190 0.43 +0.4 5,245,652 - TX73_024190 0.45 +0.1 5,245,670 + TX73_024190 0.49 +0.2 5,245,707 - TX73_024190 0.56 +0.4 5,245,721 + TX73_024190 0.59 +0.8 5,245,721 + TX73_024190 0.59 +0.3 5,245,731 - TX73_024190 0.61 +0.7 5,245,753 + TX73_024190 0.65 -0.2 5,245,761 - TX73_024190 0.67 +0.2 5,245,768 - TX73_024190 0.68 -0.5 5,245,768 - TX73_024190 0.68 +0.8 5,245,806 + TX73_024190 0.76 +0.9 5,245,821 - TX73_024190 0.79 +0.0 5,245,880 + +0.4 5,245,922 + -0.5 5,245,997 + -0.6 5,246,003 + -1.1 5,246,026 + +0.2 5,246,055 - -0.5 5,246,055 - -0.9 5,246,068 + +0.2
Or see this region's nucleotide sequence