Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_019370

Experiment: starvation outgrowth control in CAAc

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntTX73_019360 and TX73_019365 are separated by 90 nucleotidesTX73_019365 and TX73_019370 overlap by 4 nucleotidesTX73_019370 and TX73_019375 are separated by 33 nucleotides TX73_019360: TX73_019360 - LysR substrate-binding domain-containing protein, at 4,226,825 to 4,227,715 _019360 TX73_019365: TX73_019365 - phosphorylase, at 4,227,806 to 4,228,549 _019365 TX73_019370: TX73_019370 - squalene--hopene cyclase, at 4,228,546 to 4,230,507 _019370 TX73_019375: TX73_019375 - hydroxysqualene dehydroxylase HpnE, at 4,230,541 to 4,231,797 _019375 Position (kb) 4228 4229 4230 4231Strain fitness (log2 ratio) -2 -1 0 1at 4227.593 kb on + strand, within TX73_019360at 4227.611 kb on - strand, within TX73_019360at 4227.667 kb on - strandat 4227.669 kb on + strandat 4227.729 kb on - strandat 4227.739 kb on + strandat 4227.739 kb on + strandat 4227.747 kb on - strandat 4227.791 kb on - strandat 4227.812 kb on - strandat 4227.833 kb on + strandat 4228.521 kb on + strandat 4228.534 kb on - strandat 4228.560 kb on + strandat 4228.560 kb on + strandat 4228.573 kb on - strandat 4230.488 kb on + strandat 4230.544 kb on + strandat 4230.568 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction starvation outgrowth control in CAAc
remove
4,227,593 + TX73_019360 0.86 +0.1
4,227,611 - TX73_019360 0.88 +0.1
4,227,667 - +0.6
4,227,669 + -0.3
4,227,729 - +0.1
4,227,739 + -0.9
4,227,739 + -0.2
4,227,747 - +1.4
4,227,791 - +0.1
4,227,812 - +0.4
4,227,833 + -0.4
4,228,521 + -2.1
4,228,534 - +0.3
4,228,560 + -1.5
4,228,560 + -0.7
4,228,573 - +0.1
4,230,488 + -0.7
4,230,544 + -0.2
4,230,568 + -1.3

Or see this region's nucleotide sequence