Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_015285

Experiment: starvation outgrowth control in CAAc

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntTX73_015280 and TX73_015285 are separated by 51 nucleotidesTX73_015285 and TX73_015290 are separated by 13 nucleotidesTX73_015290 and TX73_015295 are separated by 11 nucleotides TX73_015280: TX73_015280 - NADH-quinone oxidoreductase subunit D, at 3,334,481 to 3,335,689 _015280 TX73_015285: TX73_015285 - NADH-quinone oxidoreductase subunit C, at 3,335,741 to 3,336,355 _015285 TX73_015290: TX73_015290 - NADH-quinone oxidoreductase subunit B, at 3,336,369 to 3,336,965 _015290 TX73_015295: TX73_015295 - NADH-quinone oxidoreductase subunit A, at 3,336,977 to 3,337,342 _015295 Position (kb) 3335 3336 3337Strain fitness (log2 ratio) -2 -1 0 1at 3335.710 kb on - strandat 3335.711 kb on - strandat 3335.751 kb on + strandat 3336.385 kb on - strandat 3336.883 kb on + strand, within TX73_015290at 3336.912 kb on - strandat 3336.919 kb on + strandat 3336.927 kb on - strandat 3336.940 kb on + strandat 3336.968 kb on + strandat 3336.971 kb on - strandat 3336.976 kb on - strandat 3336.981 kb on - strandat 3336.982 kb on - strandat 3337.351 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction starvation outgrowth control in CAAc
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3,335,710 - +0.0
3,335,711 - +0.1
3,335,751 + -0.6
3,336,385 - -1.1
3,336,883 + TX73_015290 0.86 -2.1
3,336,912 - -1.7
3,336,919 + +0.1
3,336,927 - -0.6
3,336,940 + +0.6
3,336,968 + -0.4
3,336,971 - -0.2
3,336,976 - +0.5
3,336,981 - +1.1
3,336,982 - -0.8
3,337,351 + -0.8

Or see this region's nucleotide sequence