Experiment: starvation outgrowth control in CAAc
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt TX73_003970 and TX73_003975 are separated by 15 nucleotides TX73_003975 and TX73_003980 overlap by 2 nucleotides
TX73_003970: TX73_003970 - hypothetical protein, at 853,003 to 853,824
_003970
TX73_003975: TX73_003975 - IS3-like element ISRpa2 family transposase, at 853,840 to 855,023
_003975
TX73_003980: TX73_003980 - pentapeptide repeat-containing protein, at 855,022 to 856,413
_003980
Position (kb) 853
854
855
856 Strain fitness (log2 ratio) -1
0
1
2 at 852.840 kb on + strand at 852.854 kb on + strand at 852.862 kb on - strand at 852.897 kb on - strand at 852.980 kb on + strand at 852.988 kb on - strand at 852.988 kb on - strand at 852.990 kb on + strand at 852.996 kb on - strand at 853.008 kb on - strand at 853.035 kb on - strand at 853.158 kb on + strand, within TX73_003970 at 853.286 kb on - strand, within TX73_003970 at 853.348 kb on - strand, within TX73_003970 at 853.410 kb on + strand, within TX73_003970 at 853.415 kb on + strand, within TX73_003970 at 853.551 kb on - strand, within TX73_003970 at 853.571 kb on + strand, within TX73_003970 at 853.578 kb on - strand, within TX73_003970 at 853.663 kb on + strand, within TX73_003970 at 853.670 kb on + strand, within TX73_003970 at 853.670 kb on + strand, within TX73_003970 at 853.678 kb on - strand, within TX73_003970 at 853.678 kb on - strand, within TX73_003970 at 853.678 kb on - strand, within TX73_003970 at 853.738 kb on + strand, within TX73_003970 at 853.761 kb on - strand at 853.769 kb on - strand at 853.774 kb on + strand at 853.779 kb on - strand at 853.793 kb on + strand at 853.793 kb on + strand at 853.855 kb on - strand at 855.103 kb on - strand at 855.108 kb on - strand at 855.110 kb on + strand at 855.118 kb on - strand at 855.118 kb on - strand at 855.170 kb on + strand, within TX73_003980 at 855.172 kb on - strand, within TX73_003980 at 855.178 kb on - strand, within TX73_003980 at 855.178 kb on - strand, within TX73_003980 at 855.214 kb on + strand, within TX73_003980 at 855.231 kb on + strand, within TX73_003980 at 855.238 kb on + strand, within TX73_003980 at 855.239 kb on - strand, within TX73_003980 at 855.246 kb on - strand, within TX73_003980 at 855.246 kb on - strand, within TX73_003980 at 855.254 kb on + strand, within TX73_003980 at 855.258 kb on + strand, within TX73_003980 at 855.269 kb on - strand, within TX73_003980 at 855.269 kb on - strand, within TX73_003980 at 855.274 kb on + strand, within TX73_003980 at 855.274 kb on + strand, within TX73_003980 at 855.276 kb on - strand, within TX73_003980 at 855.314 kb on + strand, within TX73_003980 at 855.314 kb on + strand, within TX73_003980 at 855.322 kb on - strand, within TX73_003980 at 855.322 kb on - strand, within TX73_003980 at 855.335 kb on + strand, within TX73_003980 at 855.337 kb on + strand, within TX73_003980 at 855.343 kb on - strand, within TX73_003980 at 855.352 kb on + strand, within TX73_003980 at 855.357 kb on + strand, within TX73_003980 at 855.357 kb on + strand, within TX73_003980 at 855.360 kb on - strand, within TX73_003980 at 855.360 kb on - strand, within TX73_003980 at 855.362 kb on + strand, within TX73_003980 at 855.382 kb on - strand, within TX73_003980 at 855.409 kb on + strand, within TX73_003980 at 855.426 kb on - strand, within TX73_003980 at 855.454 kb on + strand, within TX73_003980 at 855.464 kb on + strand, within TX73_003980 at 855.488 kb on - strand, within TX73_003980 at 855.492 kb on - strand, within TX73_003980 at 855.569 kb on + strand, within TX73_003980 at 855.587 kb on - strand, within TX73_003980 at 855.645 kb on + strand, within TX73_003980 at 855.679 kb on + strand, within TX73_003980 at 855.704 kb on - strand, within TX73_003980 at 855.769 kb on + strand, within TX73_003980 at 855.824 kb on + strand, within TX73_003980 at 855.824 kb on + strand, within TX73_003980 at 855.913 kb on - strand, within TX73_003980 at 855.941 kb on + strand, within TX73_003980
Per-strain Table
Position Strand Gene LocusTag Fraction starvation outgrowth control in CAAc remove 852,840 + -1.2 852,854 + +0.1 852,862 - -0.1 852,897 - +0.1 852,980 + -1.3 852,988 - +0.6 852,988 - -1.2 852,990 + +0.4 852,996 - -0.3 853,008 - +1.4 853,035 - +0.8 853,158 + TX73_003970 0.19 -0.9 853,286 - TX73_003970 0.34 +0.1 853,348 - TX73_003970 0.42 -0.4 853,410 + TX73_003970 0.50 +0.2 853,415 + TX73_003970 0.50 -0.2 853,551 - TX73_003970 0.67 +1.1 853,571 + TX73_003970 0.69 -0.6 853,578 - TX73_003970 0.70 -0.6 853,663 + TX73_003970 0.80 +0.2 853,670 + TX73_003970 0.81 +0.6 853,670 + TX73_003970 0.81 -1.4 853,678 - TX73_003970 0.82 -0.5 853,678 - TX73_003970 0.82 -0.9 853,678 - TX73_003970 0.82 +1.4 853,738 + TX73_003970 0.89 +0.7 853,761 - -0.2 853,769 - +2.1 853,774 + +0.9 853,779 - -0.3 853,793 + -0.4 853,793 + +0.3 853,855 - +0.1 855,103 - -0.1 855,108 - +0.2 855,110 + -0.5 855,118 - +0.1 855,118 - -0.4 855,170 + TX73_003980 0.11 +1.1 855,172 - TX73_003980 0.11 +0.4 855,178 - TX73_003980 0.11 -1.4 855,178 - TX73_003980 0.11 +0.4 855,214 + TX73_003980 0.14 +0.2 855,231 + TX73_003980 0.15 +0.8 855,238 + TX73_003980 0.16 -0.1 855,239 - TX73_003980 0.16 -0.6 855,246 - TX73_003980 0.16 -1.2 855,246 - TX73_003980 0.16 +0.4 855,254 + TX73_003980 0.17 +0.5 855,258 + TX73_003980 0.17 -0.6 855,269 - TX73_003980 0.18 +0.7 855,269 - TX73_003980 0.18 -0.6 855,274 + TX73_003980 0.18 -0.1 855,274 + TX73_003980 0.18 +0.0 855,276 - TX73_003980 0.18 +0.3 855,314 + TX73_003980 0.21 -0.9 855,314 + TX73_003980 0.21 +1.1 855,322 - TX73_003980 0.22 +0.5 855,322 - TX73_003980 0.22 -0.7 855,335 + TX73_003980 0.22 -0.8 855,337 + TX73_003980 0.23 -0.5 855,343 - TX73_003980 0.23 -1.2 855,352 + TX73_003980 0.24 -0.3 855,357 + TX73_003980 0.24 -0.1 855,357 + TX73_003980 0.24 -0.4 855,360 - TX73_003980 0.24 +0.2 855,360 - TX73_003980 0.24 -0.4 855,362 + TX73_003980 0.24 -0.2 855,382 - TX73_003980 0.26 +1.0 855,409 + TX73_003980 0.28 +0.1 855,426 - TX73_003980 0.29 -0.1 855,454 + TX73_003980 0.31 -1.3 855,464 + TX73_003980 0.32 -0.2 855,488 - TX73_003980 0.33 -0.3 855,492 - TX73_003980 0.34 -1.3 855,569 + TX73_003980 0.39 -0.7 855,587 - TX73_003980 0.41 +0.2 855,645 + TX73_003980 0.45 +0.5 855,679 + TX73_003980 0.47 -0.1 855,704 - TX73_003980 0.49 +0.4 855,769 + TX73_003980 0.54 -0.6 855,824 + TX73_003980 0.58 -0.2 855,824 + TX73_003980 0.58 -0.4 855,913 - TX73_003980 0.64 -1.7 855,941 + TX73_003980 0.66 -0.9
Or see this region's nucleotide sequence