Experiment: starvation outgrowth control in CAAc
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt TX73_002685 and TX73_002690 are separated by 13 nucleotides TX73_002690 and TX73_002695 are separated by 242 nucleotides
TX73_002685: TX73_002685 - DMT family transporter, at 577,438 to 578,361
_002685
TX73_002690: TX73_002690 - flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase, at 578,375 to 579,670
_002690
TX73_002695: TX73_002695 - Na+/H+ antiporter, at 579,913 to 581,565
_002695
Position (kb) 578
579
580 Strain fitness (log2 ratio) -2
-1
0
1
2 at 577.402 kb on - strand at 577.419 kb on - strand at 577.428 kb on + strand at 577.433 kb on + strand at 577.435 kb on + strand at 577.436 kb on + strand at 577.441 kb on - strand at 577.443 kb on - strand at 577.469 kb on + strand at 577.479 kb on + strand at 577.484 kb on + strand at 577.485 kb on - strand at 577.487 kb on - strand at 577.491 kb on + strand at 577.499 kb on + strand at 577.499 kb on - strand at 577.504 kb on + strand at 577.538 kb on - strand, within TX73_002685 at 577.556 kb on - strand, within TX73_002685 at 577.588 kb on + strand, within TX73_002685 at 577.588 kb on + strand, within TX73_002685 at 577.589 kb on - strand, within TX73_002685 at 577.621 kb on - strand, within TX73_002685 at 577.623 kb on + strand, within TX73_002685 at 577.634 kb on + strand, within TX73_002685 at 577.642 kb on - strand, within TX73_002685 at 577.642 kb on - strand, within TX73_002685 at 577.646 kb on + strand, within TX73_002685 at 577.659 kb on - strand, within TX73_002685 at 577.687 kb on + strand, within TX73_002685 at 577.692 kb on + strand, within TX73_002685 at 577.700 kb on - strand, within TX73_002685 at 577.700 kb on - strand, within TX73_002685 at 577.701 kb on - strand, within TX73_002685 at 577.703 kb on + strand, within TX73_002685 at 577.703 kb on + strand, within TX73_002685 at 577.703 kb on + strand, within TX73_002685 at 577.703 kb on + strand, within TX73_002685 at 577.703 kb on + strand, within TX73_002685 at 577.703 kb on + strand, within TX73_002685 at 577.703 kb on + strand, within TX73_002685 at 577.711 kb on - strand, within TX73_002685 at 577.711 kb on - strand, within TX73_002685 at 577.711 kb on - strand, within TX73_002685 at 577.711 kb on - strand, within TX73_002685 at 577.711 kb on - strand, within TX73_002685 at 577.711 kb on - strand, within TX73_002685 at 577.711 kb on - strand, within TX73_002685 at 577.711 kb on - strand, within TX73_002685 at 577.711 kb on - strand, within TX73_002685 at 577.711 kb on - strand, within TX73_002685 at 577.711 kb on - strand, within TX73_002685 at 577.713 kb on + strand, within TX73_002685 at 577.713 kb on + strand, within TX73_002685 at 577.721 kb on - strand, within TX73_002685 at 577.738 kb on + strand, within TX73_002685 at 577.740 kb on + strand, within TX73_002685 at 577.740 kb on + strand, within TX73_002685 at 577.740 kb on + strand, within TX73_002685 at 577.740 kb on + strand, within TX73_002685 at 577.740 kb on + strand, within TX73_002685 at 577.740 kb on + strand, within TX73_002685 at 577.740 kb on + strand, within TX73_002685 at 577.740 kb on + strand, within TX73_002685 at 577.740 kb on + strand, within TX73_002685 at 577.740 kb on + strand, within TX73_002685 at 577.740 kb on + strand, within TX73_002685 at 577.740 kb on - strand, within TX73_002685 at 577.746 kb on - strand, within TX73_002685 at 577.746 kb on - strand, within TX73_002685 at 577.748 kb on - strand, within TX73_002685 at 577.748 kb on - strand, within TX73_002685 at 577.748 kb on - strand, within TX73_002685 at 577.748 kb on - strand, within TX73_002685 at 577.748 kb on - strand, within TX73_002685 at 577.748 kb on - strand, within TX73_002685 at 577.748 kb on - strand, within TX73_002685 at 577.748 kb on - strand, within TX73_002685 at 577.748 kb on - strand, within TX73_002685 at 577.748 kb on - strand, within TX73_002685 at 577.755 kb on + strand, within TX73_002685 at 577.758 kb on - strand, within TX73_002685 at 577.780 kb on + strand, within TX73_002685 at 577.780 kb on - strand, within TX73_002685 at 577.783 kb on - strand, within TX73_002685 at 577.783 kb on - strand, within TX73_002685 at 577.820 kb on + strand, within TX73_002685 at 577.820 kb on + strand, within TX73_002685 at 577.825 kb on + strand, within TX73_002685 at 577.828 kb on - strand, within TX73_002685 at 577.859 kb on - strand, within TX73_002685 at 577.869 kb on + strand, within TX73_002685 at 577.872 kb on - strand, within TX73_002685 at 577.877 kb on - strand, within TX73_002685 at 577.911 kb on + strand, within TX73_002685 at 577.919 kb on - strand, within TX73_002685 at 577.937 kb on + strand, within TX73_002685 at 577.937 kb on + strand, within TX73_002685 at 577.937 kb on + strand, within TX73_002685 at 577.937 kb on + strand, within TX73_002685 at 577.942 kb on + strand, within TX73_002685 at 577.945 kb on - strand, within TX73_002685 at 577.945 kb on - strand, within TX73_002685 at 577.981 kb on + strand, within TX73_002685 at 577.989 kb on + strand, within TX73_002685 at 577.990 kb on + strand, within TX73_002685 at 577.990 kb on + strand, within TX73_002685 at 578.038 kb on + strand, within TX73_002685 at 578.041 kb on + strand, within TX73_002685 at 578.051 kb on - strand, within TX73_002685 at 578.080 kb on + strand, within TX73_002685 at 578.114 kb on - strand, within TX73_002685 at 578.141 kb on + strand, within TX73_002685 at 578.151 kb on + strand, within TX73_002685 at 578.159 kb on - strand, within TX73_002685 at 578.160 kb on - strand, within TX73_002685 at 578.192 kb on + strand, within TX73_002685 at 578.237 kb on - strand, within TX73_002685 at 578.249 kb on + strand, within TX73_002685 at 578.255 kb on - strand, within TX73_002685 at 578.272 kb on + strand at 578.282 kb on + strand at 578.297 kb on - strand at 578.326 kb on - strand at 578.372 kb on + strand at 578.372 kb on + strand at 579.598 kb on + strand at 579.613 kb on + strand at 579.621 kb on - strand at 579.621 kb on - strand at 579.641 kb on - strand at 579.670 kb on + strand at 579.670 kb on + strand at 579.679 kb on - strand at 579.679 kb on - strand at 579.679 kb on - strand at 579.698 kb on - strand at 579.700 kb on - strand at 579.702 kb on - strand at 579.723 kb on + strand at 579.723 kb on - strand at 579.731 kb on - strand at 579.741 kb on - strand at 579.790 kb on + strand at 579.800 kb on + strand at 579.800 kb on + strand at 579.800 kb on + strand at 579.840 kb on + strand at 579.845 kb on + strand at 579.845 kb on + strand at 579.882 kb on - strand at 579.889 kb on + strand at 579.889 kb on + strand at 579.896 kb on + strand at 579.900 kb on + strand at 579.911 kb on + strand at 579.918 kb on - strand at 579.918 kb on - strand at 579.947 kb on + strand at 579.955 kb on - strand at 579.957 kb on + strand at 579.957 kb on + strand at 579.961 kb on - strand at 579.963 kb on + strand at 579.998 kb on + strand at 580.026 kb on - strand at 580.034 kb on + strand at 580.054 kb on - strand at 580.071 kb on - strand at 580.073 kb on - strand at 580.088 kb on + strand, within TX73_002695 at 580.116 kb on - strand, within TX73_002695 at 580.125 kb on - strand, within TX73_002695 at 580.125 kb on - strand, within TX73_002695 at 580.136 kb on + strand, within TX73_002695 at 580.138 kb on - strand, within TX73_002695 at 580.140 kb on + strand, within TX73_002695 at 580.144 kb on - strand, within TX73_002695 at 580.148 kb on - strand, within TX73_002695 at 580.169 kb on - strand, within TX73_002695 at 580.251 kb on + strand, within TX73_002695 at 580.295 kb on + strand, within TX73_002695 at 580.308 kb on - strand, within TX73_002695 at 580.323 kb on + strand, within TX73_002695 at 580.323 kb on + strand, within TX73_002695 at 580.329 kb on + strand, within TX73_002695 at 580.329 kb on + strand, within TX73_002695 at 580.342 kb on - strand, within TX73_002695 at 580.342 kb on - strand, within TX73_002695 at 580.352 kb on - strand, within TX73_002695 at 580.367 kb on - strand, within TX73_002695 at 580.377 kb on + strand, within TX73_002695 at 580.413 kb on + strand, within TX73_002695 at 580.416 kb on + strand, within TX73_002695 at 580.418 kb on + strand, within TX73_002695 at 580.418 kb on + strand, within TX73_002695 at 580.418 kb on + strand, within TX73_002695 at 580.418 kb on + strand, within TX73_002695 at 580.418 kb on + strand, within TX73_002695 at 580.418 kb on + strand, within TX73_002695 at 580.418 kb on + strand, within TX73_002695 at 580.418 kb on + strand, within TX73_002695 at 580.418 kb on + strand, within TX73_002695 at 580.418 kb on + strand, within TX73_002695 at 580.418 kb on + strand, within TX73_002695 at 580.419 kb on - strand, within TX73_002695 at 580.423 kb on + strand, within TX73_002695 at 580.426 kb on - strand, within TX73_002695 at 580.426 kb on - strand, within TX73_002695 at 580.426 kb on - strand, within TX73_002695 at 580.426 kb on - strand, within TX73_002695 at 580.426 kb on - strand, within TX73_002695 at 580.426 kb on - strand, within TX73_002695 at 580.426 kb on - strand, within TX73_002695 at 580.426 kb on - strand, within TX73_002695 at 580.426 kb on - strand, within TX73_002695 at 580.426 kb on - strand, within TX73_002695 at 580.426 kb on - strand, within TX73_002695 at 580.428 kb on + strand, within TX73_002695 at 580.431 kb on - strand, within TX73_002695 at 580.444 kb on + strand, within TX73_002695 at 580.452 kb on - strand, within TX73_002695 at 580.452 kb on - strand, within TX73_002695 at 580.459 kb on + strand, within TX73_002695 at 580.464 kb on + strand, within TX73_002695 at 580.472 kb on - strand, within TX73_002695 at 580.507 kb on - strand, within TX73_002695 at 580.538 kb on + strand, within TX73_002695 at 580.565 kb on + strand, within TX73_002695 at 580.653 kb on + strand, within TX73_002695 at 580.657 kb on - strand, within TX73_002695 at 580.657 kb on - strand, within TX73_002695 at 580.659 kb on - strand, within TX73_002695 at 580.659 kb on - strand, within TX73_002695 at 580.659 kb on - strand, within TX73_002695 at 580.668 kb on + strand, within TX73_002695
Per-strain Table
Position Strand Gene LocusTag Fraction starvation outgrowth control in CAAc remove 577,402 - +0.4 577,419 - +0.0 577,428 + +0.1 577,433 + +0.6 577,435 + -0.3 577,436 + +0.3 577,441 - +0.6 577,443 - -0.1 577,469 + -0.3 577,479 + +0.1 577,484 + -0.5 577,485 - -1.5 577,487 - +0.6 577,491 + +0.4 577,499 + +0.2 577,499 - +0.5 577,504 + -0.7 577,538 - TX73_002685 0.11 -0.0 577,556 - TX73_002685 0.13 +1.0 577,588 + TX73_002685 0.16 +0.3 577,588 + TX73_002685 0.16 -0.2 577,589 - TX73_002685 0.16 +0.0 577,621 - TX73_002685 0.20 -0.3 577,623 + TX73_002685 0.20 +0.1 577,634 + TX73_002685 0.21 +0.2 577,642 - TX73_002685 0.22 +0.7 577,642 - TX73_002685 0.22 +0.2 577,646 + TX73_002685 0.23 -0.1 577,659 - TX73_002685 0.24 +0.6 577,687 + TX73_002685 0.27 -0.5 577,692 + TX73_002685 0.27 -0.5 577,700 - TX73_002685 0.28 +1.1 577,700 - TX73_002685 0.28 -0.7 577,701 - TX73_002685 0.28 +0.3 577,703 + TX73_002685 0.29 -0.5 577,703 + TX73_002685 0.29 +0.2 577,703 + TX73_002685 0.29 +0.1 577,703 + TX73_002685 0.29 +0.6 577,703 + TX73_002685 0.29 +0.1 577,703 + TX73_002685 0.29 +0.5 577,703 + TX73_002685 0.29 -0.3 577,711 - TX73_002685 0.30 -0.2 577,711 - TX73_002685 0.30 +0.5 577,711 - TX73_002685 0.30 -0.4 577,711 - TX73_002685 0.30 -0.3 577,711 - TX73_002685 0.30 -0.3 577,711 - TX73_002685 0.30 +0.9 577,711 - TX73_002685 0.30 -0.4 577,711 - TX73_002685 0.30 -0.8 577,711 - TX73_002685 0.30 -1.7 577,711 - TX73_002685 0.30 -0.1 577,711 - TX73_002685 0.30 -0.6 577,713 + TX73_002685 0.30 -0.5 577,713 + TX73_002685 0.30 -0.4 577,721 - TX73_002685 0.31 -0.0 577,738 + TX73_002685 0.32 -0.1 577,740 + TX73_002685 0.33 +0.5 577,740 + TX73_002685 0.33 +0.3 577,740 + TX73_002685 0.33 +0.5 577,740 + TX73_002685 0.33 -0.4 577,740 + TX73_002685 0.33 -0.8 577,740 + TX73_002685 0.33 -0.2 577,740 + TX73_002685 0.33 +0.5 577,740 + TX73_002685 0.33 +0.3 577,740 + TX73_002685 0.33 -0.3 577,740 + TX73_002685 0.33 +0.3 577,740 + TX73_002685 0.33 -0.2 577,740 - TX73_002685 0.33 +0.5 577,746 - TX73_002685 0.33 -0.5 577,746 - TX73_002685 0.33 +0.3 577,748 - TX73_002685 0.34 +0.4 577,748 - TX73_002685 0.34 -0.4 577,748 - TX73_002685 0.34 -0.1 577,748 - TX73_002685 0.34 +0.6 577,748 - TX73_002685 0.34 -1.4 577,748 - TX73_002685 0.34 -0.4 577,748 - TX73_002685 0.34 +0.3 577,748 - TX73_002685 0.34 -0.3 577,748 - TX73_002685 0.34 -1.0 577,748 - TX73_002685 0.34 -2.7 577,755 + TX73_002685 0.34 -0.1 577,758 - TX73_002685 0.35 +0.1 577,780 + TX73_002685 0.37 +0.2 577,780 - TX73_002685 0.37 -0.4 577,783 - TX73_002685 0.37 +0.4 577,783 - TX73_002685 0.37 +0.6 577,820 + TX73_002685 0.41 +0.4 577,820 + TX73_002685 0.41 +1.1 577,825 + TX73_002685 0.42 -0.5 577,828 - TX73_002685 0.42 +0.8 577,859 - TX73_002685 0.46 +0.6 577,869 + TX73_002685 0.47 +0.4 577,872 - TX73_002685 0.47 +0.2 577,877 - TX73_002685 0.48 +0.2 577,911 + TX73_002685 0.51 -0.9 577,919 - TX73_002685 0.52 +0.5 577,937 + TX73_002685 0.54 -0.6 577,937 + TX73_002685 0.54 -0.1 577,937 + TX73_002685 0.54 -0.1 577,937 + TX73_002685 0.54 +0.8 577,942 + TX73_002685 0.55 +0.1 577,945 - TX73_002685 0.55 +0.2 577,945 - TX73_002685 0.55 +0.3 577,981 + TX73_002685 0.59 -0.4 577,989 + TX73_002685 0.60 +0.1 577,990 + TX73_002685 0.60 +0.1 577,990 + TX73_002685 0.60 +0.5 578,038 + TX73_002685 0.65 -0.7 578,041 + TX73_002685 0.65 +0.2 578,051 - TX73_002685 0.66 +0.1 578,080 + TX73_002685 0.69 -1.2 578,114 - TX73_002685 0.73 -0.1 578,141 + TX73_002685 0.76 +1.1 578,151 + TX73_002685 0.77 -0.9 578,159 - TX73_002685 0.78 +0.1 578,160 - TX73_002685 0.78 -0.4 578,192 + TX73_002685 0.82 -0.9 578,237 - TX73_002685 0.86 +0.3 578,249 + TX73_002685 0.88 -0.3 578,255 - TX73_002685 0.88 +0.2 578,272 + -0.7 578,282 + +0.1 578,297 - -0.2 578,326 - +1.0 578,372 + -0.3 578,372 + -0.4 579,598 + +0.4 579,613 + -0.5 579,621 - -0.4 579,621 - -1.6 579,641 - -1.0 579,670 + +0.4 579,670 + +1.9 579,679 - +0.1 579,679 - -0.3 579,679 - -0.2 579,698 - -0.6 579,700 - +0.6 579,702 - -0.5 579,723 + +0.1 579,723 - -0.3 579,731 - -0.2 579,741 - +0.3 579,790 + -1.8 579,800 + -0.9 579,800 + -0.0 579,800 + +1.1 579,840 + -0.3 579,845 + +0.4 579,845 + +0.3 579,882 - +0.5 579,889 + +0.1 579,889 + +0.6 579,896 + -1.0 579,900 + -0.3 579,911 + +0.6 579,918 - -0.6 579,918 - -1.1 579,947 + -1.4 579,955 - +0.3 579,957 + +0.2 579,957 + +0.2 579,961 - +0.2 579,963 + -0.1 579,998 + +0.8 580,026 - -0.8 580,034 + -0.1 580,054 - -0.4 580,071 - -0.7 580,073 - +0.1 580,088 + TX73_002695 0.11 -0.7 580,116 - TX73_002695 0.12 -0.3 580,125 - TX73_002695 0.13 +0.9 580,125 - TX73_002695 0.13 +0.3 580,136 + TX73_002695 0.13 +1.3 580,138 - TX73_002695 0.14 +0.4 580,140 + TX73_002695 0.14 -0.9 580,144 - TX73_002695 0.14 +0.6 580,148 - TX73_002695 0.14 +0.4 580,169 - TX73_002695 0.15 +0.1 580,251 + TX73_002695 0.20 +0.2 580,295 + TX73_002695 0.23 -0.4 580,308 - TX73_002695 0.24 +0.1 580,323 + TX73_002695 0.25 +0.5 580,323 + TX73_002695 0.25 +0.6 580,329 + TX73_002695 0.25 +0.1 580,329 + TX73_002695 0.25 -0.9 580,342 - TX73_002695 0.26 -0.2 580,342 - TX73_002695 0.26 -0.1 580,352 - TX73_002695 0.27 -0.3 580,367 - TX73_002695 0.27 -0.3 580,377 + TX73_002695 0.28 -2.6 580,413 + TX73_002695 0.30 +1.1 580,416 + TX73_002695 0.30 -0.0 580,418 + TX73_002695 0.31 -0.6 580,418 + TX73_002695 0.31 -0.4 580,418 + TX73_002695 0.31 +0.1 580,418 + TX73_002695 0.31 -0.4 580,418 + TX73_002695 0.31 -0.2 580,418 + TX73_002695 0.31 -0.3 580,418 + TX73_002695 0.31 +0.6 580,418 + TX73_002695 0.31 -0.7 580,418 + TX73_002695 0.31 -0.4 580,418 + TX73_002695 0.31 -0.8 580,418 + TX73_002695 0.31 -0.2 580,419 - TX73_002695 0.31 -0.9 580,423 + TX73_002695 0.31 -1.5 580,426 - TX73_002695 0.31 +0.1 580,426 - TX73_002695 0.31 +0.1 580,426 - TX73_002695 0.31 -0.1 580,426 - TX73_002695 0.31 -0.0 580,426 - TX73_002695 0.31 +0.2 580,426 - TX73_002695 0.31 +0.5 580,426 - TX73_002695 0.31 +0.1 580,426 - TX73_002695 0.31 -0.5 580,426 - TX73_002695 0.31 +0.3 580,426 - TX73_002695 0.31 +0.6 580,426 - TX73_002695 0.31 -1.4 580,428 + TX73_002695 0.31 +0.6 580,431 - TX73_002695 0.31 +0.0 580,444 + TX73_002695 0.32 -0.2 580,452 - TX73_002695 0.33 -0.5 580,452 - TX73_002695 0.33 -0.6 580,459 + TX73_002695 0.33 +0.2 580,464 + TX73_002695 0.33 +0.5 580,472 - TX73_002695 0.34 -0.7 580,507 - TX73_002695 0.36 -0.8 580,538 + TX73_002695 0.38 +0.3 580,565 + TX73_002695 0.39 -0.6 580,653 + TX73_002695 0.45 -1.3 580,657 - TX73_002695 0.45 -0.6 580,657 - TX73_002695 0.45 +2.0 580,659 - TX73_002695 0.45 -0.2 580,659 - TX73_002695 0.45 +0.8 580,659 - TX73_002695 0.45 +0.1 580,668 + TX73_002695 0.46 -0.1
Or see this region's nucleotide sequence