Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_002465

Experiment: starvation outgrowth control in CAAc

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntTX73_002460 and TX73_002465 are separated by 66 nucleotidesTX73_002465 and TX73_002470 are separated by 210 nucleotides TX73_002460: TX73_002460 - NADP-dependent oxidoreductase, at 525,559 to 526,560 _002460 TX73_002465: TX73_002465 - tRNA-Arg, at 526,627 to 526,703 _002465 TX73_002470: TX73_002470 - pilus assembly protein, at 526,914 to 528,245 _002470 Position (kb) 526 527Strain fitness (log2 ratio) -2 -1 0 1at 525.686 kb on - strand, within TX73_002460at 525.689 kb on + strand, within TX73_002460at 525.782 kb on - strand, within TX73_002460at 525.800 kb on + strand, within TX73_002460at 525.828 kb on - strand, within TX73_002460at 525.866 kb on - strand, within TX73_002460at 525.871 kb on - strand, within TX73_002460at 525.897 kb on + strand, within TX73_002460at 525.905 kb on - strand, within TX73_002460at 525.905 kb on - strand, within TX73_002460at 525.931 kb on + strand, within TX73_002460at 526.067 kb on - strand, within TX73_002460at 526.134 kb on + strand, within TX73_002460at 526.167 kb on + strand, within TX73_002460at 526.174 kb on + strand, within TX73_002460at 526.175 kb on - strand, within TX73_002460at 526.175 kb on - strand, within TX73_002460at 526.175 kb on - strand, within TX73_002460at 526.175 kb on - strand, within TX73_002460at 526.184 kb on + strand, within TX73_002460at 526.207 kb on - strand, within TX73_002460at 526.237 kb on + strand, within TX73_002460at 526.261 kb on + strand, within TX73_002460at 526.315 kb on + strand, within TX73_002460at 526.315 kb on + strand, within TX73_002460at 526.323 kb on - strand, within TX73_002460at 526.364 kb on + strand, within TX73_002460at 526.377 kb on + strand, within TX73_002460at 526.395 kb on + strand, within TX73_002460at 526.397 kb on + strand, within TX73_002460at 526.400 kb on - strand, within TX73_002460at 526.405 kb on - strand, within TX73_002460at 526.429 kb on + strand, within TX73_002460at 526.462 kb on + strandat 526.463 kb on - strandat 526.470 kb on - strandat 526.488 kb on + strandat 526.488 kb on + strandat 526.548 kb on + strandat 526.554 kb on + strandat 526.562 kb on - strandat 526.562 kb on - strandat 526.563 kb on - strandat 526.568 kb on - strandat 526.595 kb on - strandat 526.626 kb on - strandat 526.714 kb on + strandat 526.714 kb on + strandat 526.724 kb on + strandat 526.729 kb on - strandat 526.737 kb on + strandat 526.737 kb on + strandat 526.737 kb on + strandat 526.738 kb on + strandat 526.738 kb on + strandat 526.745 kb on - strandat 526.789 kb on + strandat 526.827 kb on - strandat 526.858 kb on - strandat 526.903 kb on - strandat 526.905 kb on + strandat 526.913 kb on - strandat 526.968 kb on + strandat 527.022 kb on - strandat 527.036 kb on + strandat 527.056 kb on - strand, within TX73_002470at 527.079 kb on + strand, within TX73_002470at 527.087 kb on - strand, within TX73_002470at 527.106 kb on + strand, within TX73_002470at 527.128 kb on + strand, within TX73_002470at 527.128 kb on + strand, within TX73_002470at 527.201 kb on - strand, within TX73_002470at 527.225 kb on - strand, within TX73_002470at 527.249 kb on + strand, within TX73_002470at 527.251 kb on - strand, within TX73_002470at 527.266 kb on + strand, within TX73_002470at 527.286 kb on + strand, within TX73_002470at 527.294 kb on - strand, within TX73_002470at 527.294 kb on - strand, within TX73_002470at 527.425 kb on + strand, within TX73_002470at 527.425 kb on + strand, within TX73_002470at 527.474 kb on + strand, within TX73_002470at 527.600 kb on - strand, within TX73_002470at 527.606 kb on - strand, within TX73_002470at 527.606 kb on - strand, within TX73_002470at 527.680 kb on + strand, within TX73_002470at 527.688 kb on - strand, within TX73_002470

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Per-strain Table

Position Strand Gene LocusTag Fraction starvation outgrowth control in CAAc
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525,686 - TX73_002460 0.13 +0.6
525,689 + TX73_002460 0.13 -2.0
525,782 - TX73_002460 0.22 -0.1
525,800 + TX73_002460 0.24 -0.4
525,828 - TX73_002460 0.27 +0.2
525,866 - TX73_002460 0.31 +0.2
525,871 - TX73_002460 0.31 -0.2
525,897 + TX73_002460 0.34 -2.3
525,905 - TX73_002460 0.35 +0.4
525,905 - TX73_002460 0.35 -0.1
525,931 + TX73_002460 0.37 -0.3
526,067 - TX73_002460 0.51 +0.3
526,134 + TX73_002460 0.57 -0.5
526,167 + TX73_002460 0.61 +0.3
526,174 + TX73_002460 0.61 +0.1
526,175 - TX73_002460 0.61 -1.1
526,175 - TX73_002460 0.61 -0.2
526,175 - TX73_002460 0.61 -0.3
526,175 - TX73_002460 0.61 +0.4
526,184 + TX73_002460 0.62 +0.4
526,207 - TX73_002460 0.65 +0.6
526,237 + TX73_002460 0.68 +1.1
526,261 + TX73_002460 0.70 -0.5
526,315 + TX73_002460 0.75 +0.1
526,315 + TX73_002460 0.75 -0.6
526,323 - TX73_002460 0.76 -0.1
526,364 + TX73_002460 0.80 +0.6
526,377 + TX73_002460 0.82 -0.9
526,395 + TX73_002460 0.83 +0.2
526,397 + TX73_002460 0.84 +1.4
526,400 - TX73_002460 0.84 +0.4
526,405 - TX73_002460 0.84 +0.4
526,429 + TX73_002460 0.87 +0.6
526,462 + +0.6
526,463 - +0.8
526,470 - -0.6
526,488 + -0.6
526,488 + +0.8
526,548 + +0.2
526,554 + -1.1
526,562 - -0.7
526,562 - +0.7
526,563 - -0.6
526,568 - +0.5
526,595 - +0.1
526,626 - -0.3
526,714 + -0.0
526,714 + +1.4
526,724 + +0.6
526,729 - +0.1
526,737 + -0.2
526,737 + -0.1
526,737 + +0.2
526,738 + -0.7
526,738 + -0.3
526,745 - +1.4
526,789 + -1.3
526,827 - -0.6
526,858 - -0.6
526,903 - +0.4
526,905 + +0.4
526,913 - -1.3
526,968 + +1.2
527,022 - +0.1
527,036 + -0.4
527,056 - TX73_002470 0.11 -0.3
527,079 + TX73_002470 0.12 +0.3
527,087 - TX73_002470 0.13 -0.1
527,106 + TX73_002470 0.14 +1.0
527,128 + TX73_002470 0.16 +0.2
527,128 + TX73_002470 0.16 -0.6
527,201 - TX73_002470 0.22 -0.0
527,225 - TX73_002470 0.23 +0.7
527,249 + TX73_002470 0.25 +0.6
527,251 - TX73_002470 0.25 -0.2
527,266 + TX73_002470 0.26 +0.6
527,286 + TX73_002470 0.28 +0.2
527,294 - TX73_002470 0.29 +0.5
527,294 - TX73_002470 0.29 -0.2
527,425 + TX73_002470 0.38 -0.2
527,425 + TX73_002470 0.38 +1.7
527,474 + TX73_002470 0.42 +1.3
527,600 - TX73_002470 0.52 -0.1
527,606 - TX73_002470 0.52 -0.4
527,606 - TX73_002470 0.52 -0.9
527,680 + TX73_002470 0.58 -0.5
527,688 - TX73_002470 0.58 +1.2

Or see this region's nucleotide sequence