Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_001885

Experiment: starvation outgrowth control in CAAc

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntTX73_001880 and TX73_001885 are separated by 78 nucleotidesTX73_001885 and TX73_001890 are separated by 93 nucleotides TX73_001880: TX73_001880 - endonuclease/exonuclease/phosphatase family protein, at 393,538 to 394,665 _001880 TX73_001885: TX73_001885 - sulfite exporter TauE/SafE family protein, at 394,744 to 395,547 _001885 TX73_001890: TX73_001890 - MBL fold metallo-hydrolase, at 395,641 to 396,537 _001890 Position (kb) 394 395 396Strain fitness (log2 ratio) -2 -1 0 1at 393.755 kb on + strand, within TX73_001880at 393.757 kb on + strand, within TX73_001880at 393.763 kb on - strand, within TX73_001880at 393.850 kb on + strand, within TX73_001880at 393.875 kb on - strand, within TX73_001880at 393.875 kb on - strand, within TX73_001880at 393.931 kb on - strand, within TX73_001880at 393.966 kb on + strand, within TX73_001880at 394.069 kb on - strand, within TX73_001880at 394.075 kb on - strand, within TX73_001880at 394.109 kb on - strand, within TX73_001880at 394.118 kb on - strand, within TX73_001880at 394.140 kb on - strand, within TX73_001880at 394.161 kb on - strand, within TX73_001880at 394.163 kb on + strand, within TX73_001880at 394.163 kb on + strand, within TX73_001880at 394.178 kb on - strand, within TX73_001880at 394.268 kb on - strand, within TX73_001880at 394.376 kb on - strand, within TX73_001880at 394.401 kb on + strand, within TX73_001880at 394.411 kb on + strand, within TX73_001880at 394.428 kb on - strand, within TX73_001880at 394.472 kb on + strand, within TX73_001880at 394.485 kb on - strand, within TX73_001880at 394.650 kb on + strandat 394.817 kb on - strandat 394.827 kb on - strand, within TX73_001885at 394.875 kb on - strand, within TX73_001885at 394.911 kb on + strand, within TX73_001885at 394.933 kb on - strand, within TX73_001885at 394.996 kb on - strand, within TX73_001885at 394.997 kb on + strand, within TX73_001885at 395.002 kb on + strand, within TX73_001885at 395.002 kb on + strand, within TX73_001885at 395.010 kb on - strand, within TX73_001885at 395.028 kb on - strand, within TX73_001885at 395.107 kb on - strand, within TX73_001885at 395.129 kb on + strand, within TX73_001885at 395.132 kb on - strand, within TX73_001885at 395.142 kb on - strand, within TX73_001885at 395.204 kb on + strand, within TX73_001885at 395.214 kb on - strand, within TX73_001885at 395.299 kb on + strand, within TX73_001885at 395.299 kb on + strand, within TX73_001885at 395.299 kb on + strand, within TX73_001885at 395.307 kb on - strand, within TX73_001885at 395.307 kb on - strand, within TX73_001885at 395.307 kb on - strand, within TX73_001885at 395.307 kb on - strand, within TX73_001885at 395.309 kb on + strand, within TX73_001885at 395.314 kb on + strand, within TX73_001885at 395.320 kb on + strand, within TX73_001885at 395.343 kb on - strand, within TX73_001885at 395.347 kb on - strand, within TX73_001885at 395.349 kb on - strand, within TX73_001885at 395.350 kb on - strand, within TX73_001885at 395.351 kb on + strand, within TX73_001885at 395.353 kb on - strand, within TX73_001885at 395.420 kb on - strand, within TX73_001885at 395.429 kb on - strand, within TX73_001885at 395.429 kb on - strand, within TX73_001885at 395.431 kb on + strand, within TX73_001885at 395.434 kb on - strand, within TX73_001885at 395.437 kb on - strand, within TX73_001885at 395.446 kb on + strand, within TX73_001885at 395.465 kb on + strand, within TX73_001885at 395.465 kb on + strand, within TX73_001885at 395.473 kb on - strandat 395.483 kb on - strandat 395.491 kb on + strandat 395.494 kb on - strandat 395.499 kb on - strandat 395.509 kb on - strandat 395.513 kb on + strandat 395.624 kb on + strandat 395.632 kb on - strandat 395.632 kb on - strandat 395.637 kb on - strandat 395.637 kb on - strandat 395.638 kb on + strandat 395.638 kb on + strandat 395.646 kb on - strandat 395.652 kb on + strandat 395.688 kb on + strandat 395.700 kb on + strandat 395.700 kb on + strandat 395.700 kb on + strandat 395.700 kb on + strandat 395.719 kb on - strandat 395.752 kb on + strand, within TX73_001890at 395.759 kb on + strand, within TX73_001890at 395.759 kb on + strand, within TX73_001890at 395.759 kb on + strand, within TX73_001890at 395.759 kb on + strand, within TX73_001890at 395.759 kb on + strand, within TX73_001890at 395.759 kb on + strand, within TX73_001890at 395.759 kb on + strand, within TX73_001890at 395.760 kb on - strand, within TX73_001890at 395.760 kb on - strand, within TX73_001890at 395.762 kb on - strand, within TX73_001890at 395.766 kb on - strand, within TX73_001890at 395.767 kb on - strand, within TX73_001890at 395.767 kb on - strand, within TX73_001890at 395.767 kb on - strand, within TX73_001890at 395.767 kb on - strand, within TX73_001890at 395.767 kb on - strand, within TX73_001890at 395.767 kb on - strand, within TX73_001890at 395.767 kb on - strand, within TX73_001890at 395.770 kb on + strand, within TX73_001890at 395.796 kb on + strand, within TX73_001890at 395.806 kb on + strand, within TX73_001890at 395.808 kb on + strand, within TX73_001890at 395.808 kb on + strand, within TX73_001890at 395.809 kb on - strand, within TX73_001890at 395.814 kb on - strand, within TX73_001890at 395.814 kb on - strand, within TX73_001890at 395.816 kb on - strand, within TX73_001890at 395.816 kb on - strand, within TX73_001890at 395.816 kb on - strand, within TX73_001890at 395.832 kb on + strand, within TX73_001890at 395.832 kb on + strand, within TX73_001890at 395.851 kb on + strand, within TX73_001890at 395.856 kb on + strand, within TX73_001890at 395.856 kb on - strand, within TX73_001890at 395.857 kb on + strand, within TX73_001890at 395.857 kb on + strand, within TX73_001890at 395.859 kb on - strand, within TX73_001890at 395.862 kb on + strand, within TX73_001890at 395.865 kb on - strand, within TX73_001890at 395.866 kb on - strand, within TX73_001890at 395.875 kb on + strand, within TX73_001890at 395.885 kb on - strand, within TX73_001890at 395.890 kb on + strand, within TX73_001890at 395.890 kb on + strand, within TX73_001890at 395.890 kb on + strand, within TX73_001890at 395.898 kb on - strand, within TX73_001890at 395.898 kb on - strand, within TX73_001890at 395.898 kb on - strand, within TX73_001890at 395.901 kb on + strand, within TX73_001890at 395.903 kb on - strand, within TX73_001890at 395.919 kb on + strand, within TX73_001890at 395.919 kb on + strand, within TX73_001890at 395.927 kb on - strand, within TX73_001890at 395.937 kb on + strand, within TX73_001890at 395.937 kb on + strand, within TX73_001890at 395.937 kb on + strand, within TX73_001890at 395.937 kb on + strand, within TX73_001890at 395.937 kb on + strand, within TX73_001890at 395.945 kb on - strand, within TX73_001890at 395.945 kb on - strand, within TX73_001890at 395.945 kb on - strand, within TX73_001890at 395.970 kb on + strand, within TX73_001890at 395.978 kb on - strand, within TX73_001890at 395.978 kb on - strand, within TX73_001890at 396.026 kb on - strand, within TX73_001890at 396.026 kb on - strand, within TX73_001890at 396.026 kb on - strand, within TX73_001890at 396.026 kb on - strand, within TX73_001890at 396.036 kb on + strand, within TX73_001890at 396.036 kb on + strand, within TX73_001890at 396.051 kb on - strand, within TX73_001890at 396.056 kb on + strand, within TX73_001890at 396.059 kb on - strand, within TX73_001890at 396.064 kb on - strand, within TX73_001890at 396.069 kb on + strand, within TX73_001890at 396.069 kb on + strand, within TX73_001890at 396.070 kb on - strand, within TX73_001890at 396.075 kb on - strand, within TX73_001890at 396.080 kb on + strand, within TX73_001890at 396.088 kb on - strand, within TX73_001890at 396.088 kb on - strand, within TX73_001890at 396.092 kb on - strand, within TX73_001890at 396.096 kb on - strand, within TX73_001890at 396.131 kb on - strand, within TX73_001890at 396.141 kb on + strand, within TX73_001890at 396.141 kb on + strand, within TX73_001890at 396.141 kb on + strand, within TX73_001890at 396.141 kb on + strand, within TX73_001890at 396.141 kb on + strand, within TX73_001890at 396.141 kb on + strand, within TX73_001890at 396.141 kb on + strand, within TX73_001890at 396.141 kb on + strand, within TX73_001890at 396.149 kb on - strand, within TX73_001890at 396.149 kb on - strand, within TX73_001890at 396.149 kb on - strand, within TX73_001890at 396.149 kb on - strand, within TX73_001890at 396.159 kb on - strand, within TX73_001890at 396.161 kb on - strand, within TX73_001890at 396.209 kb on - strand, within TX73_001890at 396.211 kb on + strand, within TX73_001890at 396.235 kb on + strand, within TX73_001890at 396.243 kb on - strand, within TX73_001890at 396.243 kb on - strand, within TX73_001890at 396.244 kb on + strand, within TX73_001890at 396.263 kb on + strand, within TX73_001890at 396.284 kb on + strand, within TX73_001890at 396.293 kb on - strand, within TX73_001890at 396.294 kb on - strand, within TX73_001890at 396.310 kb on - strand, within TX73_001890at 396.320 kb on - strand, within TX73_001890at 396.349 kb on - strand, within TX73_001890at 396.362 kb on + strand, within TX73_001890at 396.394 kb on + strand, within TX73_001890at 396.402 kb on - strand, within TX73_001890at 396.402 kb on - strand, within TX73_001890at 396.432 kb on + strand, within TX73_001890at 396.438 kb on + strand, within TX73_001890at 396.438 kb on + strand, within TX73_001890at 396.468 kb on + strandat 396.468 kb on + strandat 396.468 kb on + strandat 396.476 kb on - strandat 396.476 kb on - strandat 396.476 kb on - strandat 396.489 kb on + strandat 396.489 kb on + strandat 396.493 kb on - strandat 396.497 kb on - strandat 396.527 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction starvation outgrowth control in CAAc
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393,755 + TX73_001880 0.19 -0.3
393,757 + TX73_001880 0.19 +1.1
393,763 - TX73_001880 0.20 +0.4
393,850 + TX73_001880 0.28 -0.4
393,875 - TX73_001880 0.30 -1.5
393,875 - TX73_001880 0.30 -0.8
393,931 - TX73_001880 0.35 +0.7
393,966 + TX73_001880 0.38 -0.6
394,069 - TX73_001880 0.47 -0.2
394,075 - TX73_001880 0.48 -1.4
394,109 - TX73_001880 0.51 +0.4
394,118 - TX73_001880 0.51 -0.3
394,140 - TX73_001880 0.53 -0.1
394,161 - TX73_001880 0.55 +0.7
394,163 + TX73_001880 0.55 -1.8
394,163 + TX73_001880 0.55 -0.0
394,178 - TX73_001880 0.57 -1.4
394,268 - TX73_001880 0.65 +1.6
394,376 - TX73_001880 0.74 +0.2
394,401 + TX73_001880 0.77 -0.4
394,411 + TX73_001880 0.77 +0.6
394,428 - TX73_001880 0.79 -0.4
394,472 + TX73_001880 0.83 -0.0
394,485 - TX73_001880 0.84 +0.1
394,650 + +0.1
394,817 - +0.1
394,827 - TX73_001885 0.10 +0.2
394,875 - TX73_001885 0.16 -0.0
394,911 + TX73_001885 0.21 +0.4
394,933 - TX73_001885 0.24 +0.3
394,996 - TX73_001885 0.31 +1.0
394,997 + TX73_001885 0.31 +0.2
395,002 + TX73_001885 0.32 +0.2
395,002 + TX73_001885 0.32 +1.1
395,010 - TX73_001885 0.33 +0.4
395,028 - TX73_001885 0.35 +1.2
395,107 - TX73_001885 0.45 +0.9
395,129 + TX73_001885 0.48 +0.3
395,132 - TX73_001885 0.48 +0.9
395,142 - TX73_001885 0.50 -0.6
395,204 + TX73_001885 0.57 -0.4
395,214 - TX73_001885 0.58 +0.0
395,299 + TX73_001885 0.69 +0.5
395,299 + TX73_001885 0.69 -0.2
395,299 + TX73_001885 0.69 +1.2
395,307 - TX73_001885 0.70 -0.3
395,307 - TX73_001885 0.70 +0.5
395,307 - TX73_001885 0.70 -1.2
395,307 - TX73_001885 0.70 +1.2
395,309 + TX73_001885 0.70 +0.4
395,314 + TX73_001885 0.71 +0.2
395,320 + TX73_001885 0.72 -1.0
395,343 - TX73_001885 0.75 +0.1
395,347 - TX73_001885 0.75 +1.0
395,349 - TX73_001885 0.75 +0.3
395,350 - TX73_001885 0.75 -0.8
395,351 + TX73_001885 0.75 +0.9
395,353 - TX73_001885 0.76 +0.9
395,420 - TX73_001885 0.84 -0.3
395,429 - TX73_001885 0.85 -0.7
395,429 - TX73_001885 0.85 -0.7
395,431 + TX73_001885 0.85 -0.0
395,434 - TX73_001885 0.86 +0.4
395,437 - TX73_001885 0.86 +0.1
395,446 + TX73_001885 0.87 +0.5
395,465 + TX73_001885 0.90 +0.3
395,465 + TX73_001885 0.90 -0.2
395,473 - -0.8
395,483 - +0.2
395,491 + -0.6
395,494 - +0.0
395,499 - +0.1
395,509 - +0.6
395,513 + -0.1
395,624 + +0.0
395,632 - -0.2
395,632 - +0.4
395,637 - +0.3
395,637 - +0.5
395,638 + -0.1
395,638 + +0.1
395,646 - -0.3
395,652 + -0.1
395,688 + -0.4
395,700 + +0.2
395,700 + +0.8
395,700 + +0.3
395,700 + +0.2
395,719 - +0.4
395,752 + TX73_001890 0.12 -0.2
395,759 + TX73_001890 0.13 -0.4
395,759 + TX73_001890 0.13 -0.6
395,759 + TX73_001890 0.13 -0.5
395,759 + TX73_001890 0.13 -0.1
395,759 + TX73_001890 0.13 +0.5
395,759 + TX73_001890 0.13 -0.0
395,759 + TX73_001890 0.13 +0.2
395,760 - TX73_001890 0.13 +1.0
395,760 - TX73_001890 0.13 -0.3
395,762 - TX73_001890 0.13 +0.7
395,766 - TX73_001890 0.14 +0.9
395,767 - TX73_001890 0.14 -1.4
395,767 - TX73_001890 0.14 +0.7
395,767 - TX73_001890 0.14 +0.0
395,767 - TX73_001890 0.14 -0.2
395,767 - TX73_001890 0.14 +0.0
395,767 - TX73_001890 0.14 -0.8
395,767 - TX73_001890 0.14 -0.9
395,770 + TX73_001890 0.14 +0.5
395,796 + TX73_001890 0.17 -1.0
395,806 + TX73_001890 0.18 -0.2
395,808 + TX73_001890 0.19 -0.4
395,808 + TX73_001890 0.19 +0.2
395,809 - TX73_001890 0.19 -0.2
395,814 - TX73_001890 0.19 -0.5
395,814 - TX73_001890 0.19 -0.4
395,816 - TX73_001890 0.20 +0.3
395,816 - TX73_001890 0.20 -0.0
395,816 - TX73_001890 0.20 +0.4
395,832 + TX73_001890 0.21 +0.2
395,832 + TX73_001890 0.21 -0.1
395,851 + TX73_001890 0.23 +0.1
395,856 + TX73_001890 0.24 -0.3
395,856 - TX73_001890 0.24 +0.4
395,857 + TX73_001890 0.24 +0.5
395,857 + TX73_001890 0.24 -1.0
395,859 - TX73_001890 0.24 -0.7
395,862 + TX73_001890 0.25 +0.9
395,865 - TX73_001890 0.25 -0.1
395,866 - TX73_001890 0.25 -0.8
395,875 + TX73_001890 0.26 -0.1
395,885 - TX73_001890 0.27 +0.3
395,890 + TX73_001890 0.28 -0.2
395,890 + TX73_001890 0.28 +0.6
395,890 + TX73_001890 0.28 -0.2
395,898 - TX73_001890 0.29 -0.3
395,898 - TX73_001890 0.29 -0.1
395,898 - TX73_001890 0.29 +0.7
395,901 + TX73_001890 0.29 +0.1
395,903 - TX73_001890 0.29 +0.0
395,919 + TX73_001890 0.31 +0.6
395,919 + TX73_001890 0.31 +0.2
395,927 - TX73_001890 0.32 +1.4
395,937 + TX73_001890 0.33 +1.2
395,937 + TX73_001890 0.33 +1.3
395,937 + TX73_001890 0.33 -0.3
395,937 + TX73_001890 0.33 +1.2
395,937 + TX73_001890 0.33 +0.0
395,945 - TX73_001890 0.34 -0.0
395,945 - TX73_001890 0.34 +0.4
395,945 - TX73_001890 0.34 +0.5
395,970 + TX73_001890 0.37 +0.1
395,978 - TX73_001890 0.38 -0.6
395,978 - TX73_001890 0.38 +1.2
396,026 - TX73_001890 0.43 +0.3
396,026 - TX73_001890 0.43 +0.0
396,026 - TX73_001890 0.43 +0.3
396,026 - TX73_001890 0.43 +0.2
396,036 + TX73_001890 0.44 +0.2
396,036 + TX73_001890 0.44 -0.2
396,051 - TX73_001890 0.46 +0.2
396,056 + TX73_001890 0.46 -0.2
396,059 - TX73_001890 0.47 -0.3
396,064 - TX73_001890 0.47 -0.2
396,069 + TX73_001890 0.48 +0.2
396,069 + TX73_001890 0.48 -0.6
396,070 - TX73_001890 0.48 -0.9
396,075 - TX73_001890 0.48 +0.3
396,080 + TX73_001890 0.49 -2.1
396,088 - TX73_001890 0.50 -0.0
396,088 - TX73_001890 0.50 +0.2
396,092 - TX73_001890 0.50 +0.2
396,096 - TX73_001890 0.51 +1.3
396,131 - TX73_001890 0.55 -0.6
396,141 + TX73_001890 0.56 -0.2
396,141 + TX73_001890 0.56 +0.5
396,141 + TX73_001890 0.56 -0.0
396,141 + TX73_001890 0.56 -0.0
396,141 + TX73_001890 0.56 -0.8
396,141 + TX73_001890 0.56 +0.6
396,141 + TX73_001890 0.56 -1.1
396,141 + TX73_001890 0.56 -0.6
396,149 - TX73_001890 0.57 +0.8
396,149 - TX73_001890 0.57 +0.3
396,149 - TX73_001890 0.57 -1.1
396,149 - TX73_001890 0.57 +0.2
396,159 - TX73_001890 0.58 +0.4
396,161 - TX73_001890 0.58 +0.8
396,209 - TX73_001890 0.63 -0.3
396,211 + TX73_001890 0.64 +0.1
396,235 + TX73_001890 0.66 +0.9
396,243 - TX73_001890 0.67 +0.1
396,243 - TX73_001890 0.67 -0.1
396,244 + TX73_001890 0.67 +0.3
396,263 + TX73_001890 0.69 +0.4
396,284 + TX73_001890 0.72 -0.6
396,293 - TX73_001890 0.73 -0.1
396,294 - TX73_001890 0.73 -0.7
396,310 - TX73_001890 0.75 +0.6
396,320 - TX73_001890 0.76 +0.2
396,349 - TX73_001890 0.79 -0.2
396,362 + TX73_001890 0.80 -0.1
396,394 + TX73_001890 0.84 -0.1
396,402 - TX73_001890 0.85 -1.4
396,402 - TX73_001890 0.85 -0.4
396,432 + TX73_001890 0.88 -0.2
396,438 + TX73_001890 0.89 -0.5
396,438 + TX73_001890 0.89 -0.1
396,468 + +0.1
396,468 + -0.5
396,468 + -0.1
396,476 - +0.4
396,476 - -0.3
396,476 - +0.4
396,489 + -0.2
396,489 + +0.6
396,493 - -0.2
396,497 - -0.1
396,527 + -0.4

Or see this region's nucleotide sequence