Experiment: starvation outgrowth control in CAAc
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt TX73_001625 and TX73_001630 are separated by 53 nucleotides TX73_001630 and TX73_001635 are separated by 74 nucleotides TX73_001635 and TX73_001640 are separated by 188 nucleotides
TX73_001625: TX73_001625 - imidazole glycerol phosphate synthase subunit HisF, at 341,238 to 342,005
_001625
TX73_001630: TX73_001630 - phosphoribosyl-ATP diphosphatase, at 342,059 to 342,382
_001630
TX73_001635: TX73_001635 - type I pantothenate kinase, at 342,457 to 343,413
_001635
TX73_001640: TX73_001640 - GNAT family N-acetyltransferase, at 343,602 to 344,552
_001640
Position (kb) 342
343
344 Strain fitness (log2 ratio) -1
0
1 at 341.993 kb on + strand at 341.993 kb on + strand at 342.000 kb on - strand at 342.005 kb on + strand at 342.033 kb on - strand at 342.049 kb on + strand at 342.376 kb on + strand at 342.448 kb on - strand at 342.448 kb on - strand at 342.477 kb on + strand at 342.483 kb on + strand at 342.483 kb on + strand at 342.483 kb on + strand at 342.487 kb on + strand at 343.494 kb on + strand at 343.500 kb on - strand at 343.517 kb on - strand at 343.549 kb on - strand at 343.554 kb on - strand at 343.594 kb on - strand at 343.743 kb on - strand, within TX73_001640 at 343.952 kb on - strand, within TX73_001640 at 344.011 kb on - strand, within TX73_001640 at 344.116 kb on + strand, within TX73_001640 at 344.124 kb on - strand, within TX73_001640 at 344.124 kb on - strand, within TX73_001640 at 344.228 kb on + strand, within TX73_001640 at 344.236 kb on - strand, within TX73_001640 at 344.276 kb on - strand, within TX73_001640 at 344.306 kb on + strand, within TX73_001640 at 344.308 kb on + strand, within TX73_001640 at 344.384 kb on + strand, within TX73_001640
Per-strain Table
Position Strand Gene LocusTag Fraction starvation outgrowth control in CAAc remove 341,993 + -0.4 341,993 + -0.3 342,000 - -0.4 342,005 + +0.1 342,033 - -0.2 342,049 + -0.2 342,376 + -0.4 342,448 - -0.0 342,448 - -0.8 342,477 + +0.9 342,483 + -0.1 342,483 + -0.2 342,483 + +0.2 342,487 + -0.9 343,494 + -0.1 343,500 - -0.5 343,517 - -0.2 343,549 - +0.6 343,554 - -1.0 343,594 - -0.1 343,743 - TX73_001640 0.15 +0.7 343,952 - TX73_001640 0.37 -0.4 344,011 - TX73_001640 0.43 -0.2 344,116 + TX73_001640 0.54 +0.0 344,124 - TX73_001640 0.55 +1.7 344,124 - TX73_001640 0.55 -0.8 344,228 + TX73_001640 0.66 +0.0 344,236 - TX73_001640 0.67 -0.2 344,276 - TX73_001640 0.71 -0.3 344,306 + TX73_001640 0.74 +0.1 344,308 + TX73_001640 0.74 -0.1 344,384 + TX73_001640 0.82 +0.2
Or see this region's nucleotide sequence