Experiment: starvation outgrowth control in CAAc
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt TX73_001595 and TX73_001600 overlap by 4 nucleotides TX73_001600 and TX73_001605 are separated by 187 nucleotides TX73_001605 and TX73_001610 are separated by 27 nucleotides TX73_001610 and TX73_001615 overlap by 4 nucleotides
TX73_001595: TX73_001595 - DUF2585 domain-containing protein, at 337,339 to 337,950
_001595
TX73_001600: TX73_001600 - ATP-dependent protease subunit HslV, at 337,947 to 338,516
_001600
TX73_001605: TX73_001605 - imidazoleglycerol-phosphate dehydratase HisB, at 338,704 to 339,297
_001605
TX73_001610: TX73_001610 - DUF2628 domain-containing protein, at 339,325 to 339,846
_001610
TX73_001615: TX73_001615 - imidazole glycerol phosphate synthase subunit HisH, at 339,843 to 340,493
_001615
Position (kb) 338
339
340 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 337.731 kb on - strand, within TX73_001595 at 337.751 kb on + strand, within TX73_001595 at 337.751 kb on + strand, within TX73_001595 at 337.766 kb on - strand, within TX73_001595 at 337.790 kb on + strand, within TX73_001595 at 337.790 kb on + strand, within TX73_001595 at 337.795 kb on + strand, within TX73_001595 at 337.795 kb on + strand, within TX73_001595 at 337.798 kb on - strand, within TX73_001595 at 337.803 kb on - strand, within TX73_001595 at 337.819 kb on + strand, within TX73_001595 at 337.843 kb on - strand, within TX73_001595 at 337.851 kb on - strand, within TX73_001595 at 337.867 kb on - strand, within TX73_001595 at 337.869 kb on + strand, within TX73_001595 at 337.869 kb on + strand, within TX73_001595 at 337.869 kb on + strand, within TX73_001595 at 337.869 kb on + strand, within TX73_001595 at 337.877 kb on - strand, within TX73_001595 at 337.934 kb on + strand at 337.934 kb on + strand at 337.939 kb on + strand at 338.008 kb on + strand, within TX73_001600 at 338.027 kb on + strand, within TX73_001600 at 338.050 kb on + strand, within TX73_001600 at 338.050 kb on + strand, within TX73_001600 at 338.050 kb on + strand, within TX73_001600 at 338.058 kb on - strand, within TX73_001600 at 338.095 kb on + strand, within TX73_001600 at 338.132 kb on + strand, within TX73_001600 at 338.145 kb on + strand, within TX73_001600 at 338.163 kb on - strand, within TX73_001600 at 338.163 kb on - strand, within TX73_001600 at 338.224 kb on + strand, within TX73_001600 at 338.226 kb on - strand, within TX73_001600 at 338.232 kb on - strand, within TX73_001600 at 338.245 kb on + strand, within TX73_001600 at 338.248 kb on + strand, within TX73_001600 at 338.260 kb on + strand, within TX73_001600 at 338.261 kb on - strand, within TX73_001600 at 338.266 kb on - strand, within TX73_001600 at 338.266 kb on - strand, within TX73_001600 at 338.266 kb on - strand, within TX73_001600 at 338.266 kb on - strand, within TX73_001600 at 338.270 kb on + strand, within TX73_001600 at 338.277 kb on - strand, within TX73_001600 at 338.278 kb on - strand, within TX73_001600 at 338.289 kb on - strand, within TX73_001600 at 338.290 kb on + strand, within TX73_001600 at 338.298 kb on - strand, within TX73_001600 at 338.300 kb on + strand, within TX73_001600 at 338.300 kb on + strand, within TX73_001600 at 338.300 kb on - strand, within TX73_001600 at 338.308 kb on - strand, within TX73_001600 at 338.308 kb on - strand, within TX73_001600 at 338.347 kb on + strand, within TX73_001600 at 338.355 kb on - strand, within TX73_001600 at 338.368 kb on + strand, within TX73_001600 at 338.368 kb on + strand, within TX73_001600 at 338.376 kb on - strand, within TX73_001600 at 338.390 kb on + strand, within TX73_001600 at 338.413 kb on - strand, within TX73_001600 at 338.424 kb on + strand, within TX73_001600 at 338.425 kb on + strand, within TX73_001600 at 338.432 kb on - strand, within TX73_001600 at 338.434 kb on + strand, within TX73_001600 at 338.448 kb on - strand, within TX73_001600 at 338.448 kb on - strand, within TX73_001600 at 338.456 kb on + strand, within TX73_001600 at 338.459 kb on + strand, within TX73_001600 at 338.459 kb on - strand, within TX73_001600 at 338.464 kb on - strand at 338.470 kb on + strand at 338.501 kb on + strand at 338.502 kb on + strand at 338.502 kb on + strand at 338.502 kb on + strand at 338.502 kb on + strand at 338.502 kb on + strand at 338.502 kb on + strand at 338.502 kb on + strand at 338.510 kb on - strand at 338.510 kb on - strand at 338.510 kb on - strand at 338.512 kb on + strand at 338.515 kb on + strand at 338.538 kb on + strand at 338.538 kb on + strand at 338.538 kb on + strand at 338.538 kb on + strand at 338.538 kb on + strand at 338.541 kb on - strand at 338.543 kb on + strand at 338.546 kb on - strand at 338.546 kb on - strand at 338.546 kb on - strand at 338.546 kb on - strand at 338.546 kb on - strand at 338.546 kb on - strand at 338.546 kb on - strand at 338.546 kb on - strand at 338.546 kb on - strand at 338.558 kb on + strand at 338.558 kb on - strand at 338.558 kb on - strand at 338.606 kb on + strand at 338.606 kb on + strand at 338.606 kb on + strand at 338.612 kb on - strand at 338.614 kb on - strand at 338.614 kb on - strand at 338.614 kb on - strand at 338.618 kb on + strand at 338.648 kb on - strand at 338.653 kb on - strand at 338.661 kb on - strand at 338.661 kb on - strand at 338.667 kb on + strand at 338.708 kb on - strand at 339.279 kb on + strand at 339.311 kb on + strand at 339.311 kb on + strand at 339.313 kb on + strand at 339.319 kb on - strand at 339.329 kb on - strand at 339.329 kb on - strand at 339.340 kb on + strand at 339.348 kb on - strand at 339.370 kb on + strand at 339.396 kb on - strand, within TX73_001610 at 339.401 kb on - strand, within TX73_001610 at 339.401 kb on - strand, within TX73_001610 at 339.403 kb on + strand, within TX73_001610 at 339.413 kb on + strand, within TX73_001610 at 339.429 kb on - strand, within TX73_001610 at 339.452 kb on - strand, within TX73_001610 at 339.453 kb on + strand, within TX73_001610 at 339.458 kb on + strand, within TX73_001610 at 339.485 kb on + strand, within TX73_001610 at 339.485 kb on + strand, within TX73_001610 at 339.485 kb on + strand, within TX73_001610 at 339.488 kb on + strand, within TX73_001610 at 339.493 kb on - strand, within TX73_001610 at 339.517 kb on + strand, within TX73_001610 at 339.525 kb on - strand, within TX73_001610 at 339.525 kb on - strand, within TX73_001610 at 339.552 kb on + strand, within TX73_001610 at 339.560 kb on - strand, within TX73_001610 at 339.568 kb on + strand, within TX73_001610 at 339.596 kb on - strand, within TX73_001610 at 339.617 kb on - strand, within TX73_001610 at 339.622 kb on - strand, within TX73_001610 at 339.632 kb on + strand, within TX73_001610 at 339.640 kb on - strand, within TX73_001610 at 339.642 kb on + strand, within TX73_001610 at 339.647 kb on + strand, within TX73_001610 at 339.647 kb on + strand, within TX73_001610 at 339.647 kb on + strand, within TX73_001610 at 339.655 kb on + strand, within TX73_001610 at 339.655 kb on - strand, within TX73_001610 at 339.663 kb on - strand, within TX73_001610 at 339.684 kb on - strand, within TX73_001610 at 339.728 kb on + strand, within TX73_001610 at 339.728 kb on + strand, within TX73_001610 at 339.728 kb on + strand, within TX73_001610 at 339.728 kb on + strand, within TX73_001610 at 339.781 kb on - strand, within TX73_001610 at 339.828 kb on + strand at 339.828 kb on + strand at 339.828 kb on + strand at 339.837 kb on + strand at 339.837 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction starvation outgrowth control in CAAc remove 337,731 - TX73_001595 0.64 +0.3 337,751 + TX73_001595 0.67 -0.2 337,751 + TX73_001595 0.67 +0.0 337,766 - TX73_001595 0.70 -0.3 337,790 + TX73_001595 0.74 +1.3 337,790 + TX73_001595 0.74 -0.2 337,795 + TX73_001595 0.75 +0.2 337,795 + TX73_001595 0.75 -1.0 337,798 - TX73_001595 0.75 -0.4 337,803 - TX73_001595 0.76 -0.4 337,819 + TX73_001595 0.78 +2.6 337,843 - TX73_001595 0.82 -0.2 337,851 - TX73_001595 0.84 -0.2 337,867 - TX73_001595 0.86 +0.9 337,869 + TX73_001595 0.87 +1.0 337,869 + TX73_001595 0.87 +0.7 337,869 + TX73_001595 0.87 -0.3 337,869 + TX73_001595 0.87 +0.1 337,877 - TX73_001595 0.88 +0.2 337,934 + -0.3 337,934 + -0.4 337,939 + +0.7 338,008 + TX73_001600 0.11 -1.4 338,027 + TX73_001600 0.14 -1.2 338,050 + TX73_001600 0.18 -0.7 338,050 + TX73_001600 0.18 -1.2 338,050 + TX73_001600 0.18 +0.1 338,058 - TX73_001600 0.19 +0.1 338,095 + TX73_001600 0.26 -0.1 338,132 + TX73_001600 0.32 +0.0 338,145 + TX73_001600 0.35 -2.5 338,163 - TX73_001600 0.38 -0.2 338,163 - TX73_001600 0.38 -0.9 338,224 + TX73_001600 0.49 -0.2 338,226 - TX73_001600 0.49 +0.0 338,232 - TX73_001600 0.50 -0.4 338,245 + TX73_001600 0.52 -0.7 338,248 + TX73_001600 0.53 +1.2 338,260 + TX73_001600 0.55 -0.0 338,261 - TX73_001600 0.55 +0.3 338,266 - TX73_001600 0.56 +0.3 338,266 - TX73_001600 0.56 +1.3 338,266 - TX73_001600 0.56 -0.2 338,266 - TX73_001600 0.56 -1.2 338,270 + TX73_001600 0.57 +0.8 338,277 - TX73_001600 0.58 -0.4 338,278 - TX73_001600 0.58 -0.6 338,289 - TX73_001600 0.60 +0.1 338,290 + TX73_001600 0.60 -0.3 338,298 - TX73_001600 0.62 +0.0 338,300 + TX73_001600 0.62 +0.4 338,300 + TX73_001600 0.62 -0.8 338,300 - TX73_001600 0.62 +0.3 338,308 - TX73_001600 0.63 +1.1 338,308 - TX73_001600 0.63 +0.1 338,347 + TX73_001600 0.70 -0.9 338,355 - TX73_001600 0.72 -0.8 338,368 + TX73_001600 0.74 +0.4 338,368 + TX73_001600 0.74 -0.4 338,376 - TX73_001600 0.75 -0.2 338,390 + TX73_001600 0.78 -0.9 338,413 - TX73_001600 0.82 -1.1 338,424 + TX73_001600 0.84 +0.4 338,425 + TX73_001600 0.84 +0.6 338,432 - TX73_001600 0.85 +0.4 338,434 + TX73_001600 0.85 -0.5 338,448 - TX73_001600 0.88 -0.5 338,448 - TX73_001600 0.88 -0.6 338,456 + TX73_001600 0.89 -0.7 338,459 + TX73_001600 0.90 -0.9 338,459 - TX73_001600 0.90 -0.5 338,464 - +0.2 338,470 + -1.5 338,501 + +0.3 338,502 + -1.5 338,502 + -1.2 338,502 + -0.3 338,502 + -0.2 338,502 + -0.5 338,502 + -0.9 338,502 + +0.2 338,510 - -0.4 338,510 - +0.4 338,510 - -0.2 338,512 + -0.2 338,515 + +0.8 338,538 + +0.1 338,538 + -0.6 338,538 + +0.7 338,538 + +0.6 338,538 + +0.1 338,541 - +0.1 338,543 + +0.4 338,546 - +0.8 338,546 - +0.2 338,546 - -0.1 338,546 - +0.5 338,546 - +0.1 338,546 - +0.9 338,546 - -0.7 338,546 - +1.2 338,546 - -0.0 338,558 + +0.2 338,558 - -0.6 338,558 - +0.0 338,606 + -0.5 338,606 + +0.6 338,606 + +0.6 338,612 - -0.9 338,614 - -0.5 338,614 - +0.1 338,614 - -0.1 338,618 + -0.6 338,648 - -0.7 338,653 - -0.5 338,661 - +0.0 338,661 - -1.1 338,667 + +0.2 338,708 - +0.1 339,279 + -3.2 339,311 + +1.5 339,311 + -0.5 339,313 + -0.6 339,319 - +0.2 339,329 - +0.0 339,329 - -0.3 339,340 + -1.3 339,348 - +1.3 339,370 + +0.9 339,396 - TX73_001610 0.14 -0.9 339,401 - TX73_001610 0.15 -0.7 339,401 - TX73_001610 0.15 -0.3 339,403 + TX73_001610 0.15 -2.1 339,413 + TX73_001610 0.17 +0.6 339,429 - TX73_001610 0.20 -0.0 339,452 - TX73_001610 0.24 -0.4 339,453 + TX73_001610 0.25 -0.1 339,458 + TX73_001610 0.25 -1.2 339,485 + TX73_001610 0.31 -0.4 339,485 + TX73_001610 0.31 +0.1 339,485 + TX73_001610 0.31 -0.2 339,488 + TX73_001610 0.31 +1.4 339,493 - TX73_001610 0.32 -1.3 339,517 + TX73_001610 0.37 -0.6 339,525 - TX73_001610 0.38 -2.3 339,525 - TX73_001610 0.38 -0.4 339,552 + TX73_001610 0.43 +0.7 339,560 - TX73_001610 0.45 -0.1 339,568 + TX73_001610 0.47 -0.3 339,596 - TX73_001610 0.52 -0.0 339,617 - TX73_001610 0.56 +0.6 339,622 - TX73_001610 0.57 +3.0 339,632 + TX73_001610 0.59 +0.2 339,640 - TX73_001610 0.60 +1.4 339,642 + TX73_001610 0.61 +0.7 339,647 + TX73_001610 0.62 -0.8 339,647 + TX73_001610 0.62 -1.1 339,647 + TX73_001610 0.62 -0.2 339,655 + TX73_001610 0.63 -0.7 339,655 - TX73_001610 0.63 +1.2 339,663 - TX73_001610 0.65 -2.1 339,684 - TX73_001610 0.69 -0.6 339,728 + TX73_001610 0.77 -0.4 339,728 + TX73_001610 0.77 +0.3 339,728 + TX73_001610 0.77 -0.5 339,728 + TX73_001610 0.77 -0.7 339,781 - TX73_001610 0.87 +0.6 339,828 + +0.2 339,828 + +0.4 339,828 + -0.5 339,837 + -0.2 339,837 + +0.3
Or see this region's nucleotide sequence