Experiment: starvation outgrowth control in CAAc
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt TX73_001395 and TX73_001400 are separated by 26 nucleotides TX73_001400 and TX73_001405 are separated by 89 nucleotides TX73_001405 and TX73_001410 are separated by 135 nucleotides
TX73_001395: TX73_001395 - thioredoxin, at 295,679 to 296,599
_001395
TX73_001400: TX73_001400 - LON peptidase substrate-binding domain-containing protein, at 296,626 to 297,303
_001400
TX73_001405: TX73_001405 - Trm112 family protein, at 297,393 to 297,590
_001405
TX73_001410: TX73_001410 - ubiquinone biosynthesis hydroxylase, at 297,726 to 298,955
_001410
Position (kb) 297
298 Strain fitness (log2 ratio) -2
-1
0
1
2 at 296.397 kb on + strand, within TX73_001395 at 296.410 kb on - strand, within TX73_001395 at 296.415 kb on + strand, within TX73_001395 at 296.423 kb on - strand, within TX73_001395 at 296.429 kb on - strand, within TX73_001395 at 296.466 kb on - strand, within TX73_001395 at 296.466 kb on - strand, within TX73_001395 at 296.467 kb on + strand, within TX73_001395 at 296.471 kb on - strand, within TX73_001395 at 296.473 kb on + strand, within TX73_001395 at 296.486 kb on - strand, within TX73_001395 at 296.536 kb on + strand at 296.540 kb on - strand at 296.540 kb on - strand at 296.540 kb on - strand at 296.544 kb on - strand at 296.556 kb on + strand at 296.564 kb on - strand at 296.566 kb on - strand at 296.575 kb on + strand at 296.583 kb on - strand at 296.588 kb on - strand at 296.639 kb on - strand at 296.653 kb on - strand at 296.671 kb on - strand at 296.699 kb on - strand, within TX73_001400 at 296.699 kb on - strand, within TX73_001400 at 296.738 kb on - strand, within TX73_001400 at 296.750 kb on + strand, within TX73_001400 at 296.750 kb on + strand, within TX73_001400 at 296.750 kb on + strand, within TX73_001400 at 296.750 kb on + strand, within TX73_001400 at 296.750 kb on + strand, within TX73_001400 at 296.758 kb on - strand, within TX73_001400 at 296.760 kb on + strand, within TX73_001400 at 296.783 kb on + strand, within TX73_001400 at 296.783 kb on + strand, within TX73_001400 at 296.783 kb on + strand, within TX73_001400 at 296.791 kb on - strand, within TX73_001400 at 296.791 kb on - strand, within TX73_001400 at 296.791 kb on - strand, within TX73_001400 at 296.791 kb on - strand, within TX73_001400 at 296.793 kb on + strand, within TX73_001400 at 296.796 kb on - strand, within TX73_001400 at 296.797 kb on + strand, within TX73_001400 at 296.798 kb on + strand, within TX73_001400 at 296.798 kb on + strand, within TX73_001400 at 296.805 kb on - strand, within TX73_001400 at 296.806 kb on - strand, within TX73_001400 at 296.815 kb on - strand, within TX73_001400 at 296.834 kb on + strand, within TX73_001400 at 296.851 kb on - strand, within TX73_001400 at 296.853 kb on + strand, within TX73_001400 at 296.853 kb on + strand, within TX73_001400 at 296.861 kb on - strand, within TX73_001400 at 296.861 kb on - strand, within TX73_001400 at 296.861 kb on - strand, within TX73_001400 at 296.894 kb on + strand, within TX73_001400 at 296.905 kb on + strand, within TX73_001400 at 296.915 kb on + strand, within TX73_001400 at 296.915 kb on + strand, within TX73_001400 at 296.915 kb on + strand, within TX73_001400 at 296.915 kb on + strand, within TX73_001400 at 296.928 kb on - strand, within TX73_001400 at 296.933 kb on - strand, within TX73_001400 at 296.940 kb on + strand, within TX73_001400 at 296.940 kb on + strand, within TX73_001400 at 296.940 kb on - strand, within TX73_001400 at 296.948 kb on - strand, within TX73_001400 at 296.948 kb on - strand, within TX73_001400 at 296.948 kb on - strand, within TX73_001400 at 296.948 kb on - strand, within TX73_001400 at 296.948 kb on - strand, within TX73_001400 at 296.985 kb on + strand, within TX73_001400 at 297.017 kb on + strand, within TX73_001400 at 297.039 kb on + strand, within TX73_001400 at 297.039 kb on + strand, within TX73_001400 at 297.042 kb on - strand, within TX73_001400 at 297.047 kb on - strand, within TX73_001400 at 297.066 kb on - strand, within TX73_001400 at 297.068 kb on - strand, within TX73_001400 at 297.071 kb on - strand, within TX73_001400 at 297.073 kb on - strand, within TX73_001400 at 297.073 kb on - strand, within TX73_001400 at 297.078 kb on - strand, within TX73_001400 at 297.084 kb on + strand, within TX73_001400 at 297.109 kb on + strand, within TX73_001400 at 297.116 kb on - strand, within TX73_001400 at 297.142 kb on + strand, within TX73_001400 at 297.145 kb on + strand, within TX73_001400 at 297.148 kb on - strand, within TX73_001400 at 297.150 kb on - strand, within TX73_001400 at 297.150 kb on - strand, within TX73_001400 at 297.155 kb on - strand, within TX73_001400 at 297.157 kb on + strand, within TX73_001400 at 297.160 kb on + strand, within TX73_001400 at 297.191 kb on + strand, within TX73_001400 at 297.201 kb on + strand, within TX73_001400 at 297.222 kb on - strand, within TX73_001400 at 297.237 kb on + strand at 297.284 kb on - strand at 297.342 kb on + strand at 297.351 kb on + strand at 297.354 kb on - strand at 297.357 kb on + strand at 297.359 kb on - strand at 297.362 kb on + strand at 297.370 kb on - strand at 297.383 kb on + strand at 297.383 kb on + strand at 297.383 kb on + strand at 297.385 kb on - strand at 297.391 kb on - strand at 297.424 kb on - strand, within TX73_001405 at 297.424 kb on - strand, within TX73_001405 at 297.592 kb on - strand at 297.592 kb on - strand at 297.600 kb on - strand at 297.602 kb on + strand at 297.602 kb on + strand at 297.602 kb on + strand at 297.607 kb on + strand at 297.609 kb on + strand at 297.609 kb on + strand at 297.609 kb on + strand at 297.610 kb on - strand at 297.610 kb on - strand at 297.610 kb on - strand at 297.610 kb on - strand at 297.615 kb on - strand at 297.615 kb on - strand at 297.617 kb on - strand at 297.617 kb on - strand at 297.617 kb on - strand at 297.617 kb on - strand at 297.619 kb on + strand at 297.619 kb on + strand at 297.624 kb on + strand at 297.630 kb on + strand at 297.630 kb on + strand at 297.631 kb on + strand at 297.643 kb on + strand at 297.723 kb on + strand at 297.723 kb on + strand at 297.729 kb on - strand at 297.731 kb on + strand at 297.731 kb on - strand at 297.731 kb on - strand at 297.731 kb on - strand at 297.731 kb on - strand at 297.731 kb on - strand at 297.731 kb on - strand at 297.731 kb on - strand at 297.731 kb on - strand at 297.734 kb on - strand at 297.747 kb on - strand at 297.747 kb on - strand at 297.773 kb on - strand at 297.796 kb on + strand at 297.813 kb on + strand at 297.814 kb on + strand at 297.824 kb on + strand at 297.824 kb on + strand at 297.832 kb on - strand at 297.832 kb on - strand at 297.833 kb on - strand at 297.847 kb on + strand at 297.886 kb on + strand, within TX73_001410 at 297.916 kb on + strand, within TX73_001410 at 297.924 kb on - strand, within TX73_001410 at 297.924 kb on - strand, within TX73_001410 at 297.981 kb on - strand, within TX73_001410 at 297.986 kb on - strand, within TX73_001410 at 298.011 kb on + strand, within TX73_001410 at 298.028 kb on + strand, within TX73_001410 at 298.036 kb on - strand, within TX73_001410 at 298.078 kb on + strand, within TX73_001410 at 298.083 kb on - strand, within TX73_001410 at 298.086 kb on - strand, within TX73_001410 at 298.123 kb on + strand, within TX73_001410 at 298.159 kb on + strand, within TX73_001410 at 298.167 kb on - strand, within TX73_001410 at 298.176 kb on - strand, within TX73_001410 at 298.208 kb on + strand, within TX73_001410 at 298.249 kb on + strand, within TX73_001410 at 298.266 kb on + strand, within TX73_001410 at 298.269 kb on - strand, within TX73_001410 at 298.269 kb on - strand, within TX73_001410 at 298.269 kb on - strand, within TX73_001410 at 298.305 kb on + strand, within TX73_001410 at 298.312 kb on + strand, within TX73_001410 at 298.318 kb on + strand, within TX73_001410 at 298.326 kb on - strand, within TX73_001410 at 298.328 kb on - strand, within TX73_001410 at 298.341 kb on + strand, within TX73_001410 at 298.354 kb on + strand, within TX73_001410 at 298.408 kb on - strand, within TX73_001410 at 298.433 kb on + strand, within TX73_001410 at 298.433 kb on + strand, within TX73_001410 at 298.433 kb on - strand, within TX73_001410 at 298.461 kb on + strand, within TX73_001410 at 298.470 kb on + strand, within TX73_001410 at 298.501 kb on + strand, within TX73_001410 at 298.504 kb on - strand, within TX73_001410 at 298.504 kb on - strand, within TX73_001410 at 298.526 kb on + strand, within TX73_001410 at 298.526 kb on + strand, within TX73_001410 at 298.526 kb on + strand, within TX73_001410 at 298.538 kb on + strand, within TX73_001410 at 298.553 kb on + strand, within TX73_001410 at 298.553 kb on + strand, within TX73_001410 at 298.561 kb on - strand, within TX73_001410 at 298.567 kb on + strand, within TX73_001410 at 298.569 kb on - strand, within TX73_001410 at 298.569 kb on - strand, within TX73_001410 at 298.569 kb on - strand, within TX73_001410
Per-strain Table
Position Strand Gene LocusTag Fraction starvation outgrowth control in CAAc remove 296,397 + TX73_001395 0.78 +0.2 296,410 - TX73_001395 0.79 +0.6 296,415 + TX73_001395 0.80 -0.9 296,423 - TX73_001395 0.81 +0.9 296,429 - TX73_001395 0.81 +0.2 296,466 - TX73_001395 0.85 -0.2 296,466 - TX73_001395 0.85 +0.2 296,467 + TX73_001395 0.86 +0.0 296,471 - TX73_001395 0.86 +0.9 296,473 + TX73_001395 0.86 -0.1 296,486 - TX73_001395 0.88 +0.7 296,536 + +0.2 296,540 - +0.6 296,540 - -0.4 296,540 - -0.7 296,544 - -0.5 296,556 + +0.0 296,564 - +0.3 296,566 - +0.1 296,575 + -1.6 296,583 - +0.6 296,588 - +0.5 296,639 - +0.3 296,653 - -0.4 296,671 - -0.2 296,699 - TX73_001400 0.11 +0.4 296,699 - TX73_001400 0.11 +0.5 296,738 - TX73_001400 0.17 -0.1 296,750 + TX73_001400 0.18 -0.2 296,750 + TX73_001400 0.18 +0.7 296,750 + TX73_001400 0.18 +0.1 296,750 + TX73_001400 0.18 +1.4 296,750 + TX73_001400 0.18 +0.9 296,758 - TX73_001400 0.19 +0.3 296,760 + TX73_001400 0.20 -0.6 296,783 + TX73_001400 0.23 -1.1 296,783 + TX73_001400 0.23 +0.4 296,783 + TX73_001400 0.23 +0.6 296,791 - TX73_001400 0.24 -0.4 296,791 - TX73_001400 0.24 +0.7 296,791 - TX73_001400 0.24 -0.6 296,791 - TX73_001400 0.24 +0.8 296,793 + TX73_001400 0.25 -0.0 296,796 - TX73_001400 0.25 +0.6 296,797 + TX73_001400 0.25 +0.4 296,798 + TX73_001400 0.25 +0.2 296,798 + TX73_001400 0.25 +0.1 296,805 - TX73_001400 0.26 +0.3 296,806 - TX73_001400 0.27 -0.1 296,815 - TX73_001400 0.28 -1.1 296,834 + TX73_001400 0.31 +0.3 296,851 - TX73_001400 0.33 +0.3 296,853 + TX73_001400 0.33 +0.0 296,853 + TX73_001400 0.33 -0.3 296,861 - TX73_001400 0.35 -1.8 296,861 - TX73_001400 0.35 +0.5 296,861 - TX73_001400 0.35 +0.1 296,894 + TX73_001400 0.40 -1.1 296,905 + TX73_001400 0.41 -2.1 296,915 + TX73_001400 0.43 +0.3 296,915 + TX73_001400 0.43 -0.9 296,915 + TX73_001400 0.43 -1.0 296,915 + TX73_001400 0.43 +0.7 296,928 - TX73_001400 0.45 +1.3 296,933 - TX73_001400 0.45 +0.2 296,940 + TX73_001400 0.46 +0.4 296,940 + TX73_001400 0.46 -0.5 296,940 - TX73_001400 0.46 -0.7 296,948 - TX73_001400 0.47 -0.7 296,948 - TX73_001400 0.47 -0.0 296,948 - TX73_001400 0.47 -0.4 296,948 - TX73_001400 0.47 -0.7 296,948 - TX73_001400 0.47 -0.0 296,985 + TX73_001400 0.53 -0.1 297,017 + TX73_001400 0.58 +0.5 297,039 + TX73_001400 0.61 -0.6 297,039 + TX73_001400 0.61 -0.2 297,042 - TX73_001400 0.61 +1.2 297,047 - TX73_001400 0.62 +0.5 297,066 - TX73_001400 0.65 -0.9 297,068 - TX73_001400 0.65 -0.3 297,071 - TX73_001400 0.66 -0.4 297,073 - TX73_001400 0.66 +0.3 297,073 - TX73_001400 0.66 -1.8 297,078 - TX73_001400 0.67 +0.6 297,084 + TX73_001400 0.68 -1.8 297,109 + TX73_001400 0.71 -0.5 297,116 - TX73_001400 0.72 -0.7 297,142 + TX73_001400 0.76 -2.1 297,145 + TX73_001400 0.77 +2.7 297,148 - TX73_001400 0.77 -1.0 297,150 - TX73_001400 0.77 -0.0 297,150 - TX73_001400 0.77 -1.1 297,155 - TX73_001400 0.78 -0.2 297,157 + TX73_001400 0.78 -0.0 297,160 + TX73_001400 0.79 +0.4 297,191 + TX73_001400 0.83 -0.4 297,201 + TX73_001400 0.85 -0.1 297,222 - TX73_001400 0.88 -0.5 297,237 + +0.2 297,284 - +0.0 297,342 + -0.2 297,351 + +0.6 297,354 - +0.9 297,357 + +0.2 297,359 - -0.5 297,362 + +0.1 297,370 - -0.4 297,383 + -0.2 297,383 + +0.8 297,383 + +1.0 297,385 - +0.5 297,391 - +0.5 297,424 - TX73_001405 0.16 -0.5 297,424 - TX73_001405 0.16 +0.8 297,592 - -0.2 297,592 - -0.5 297,600 - -0.5 297,602 + -0.5 297,602 + -0.1 297,602 + -0.0 297,607 + +0.5 297,609 + +0.1 297,609 + +0.0 297,609 + +0.2 297,610 - +0.1 297,610 - -0.3 297,610 - -0.2 297,610 - +0.5 297,615 - +0.4 297,615 - +0.2 297,617 - -0.2 297,617 - -0.2 297,617 - -0.2 297,617 - +0.7 297,619 + -1.3 297,619 + +0.0 297,624 + -0.4 297,630 + +0.3 297,630 + +0.4 297,631 + -1.0 297,643 + +0.4 297,723 + -0.0 297,723 + -0.0 297,729 - -1.0 297,731 + +0.0 297,731 - +0.5 297,731 - -0.4 297,731 - -0.1 297,731 - +0.7 297,731 - +1.1 297,731 - -0.7 297,731 - -0.2 297,731 - +0.4 297,734 - -0.1 297,747 - -0.1 297,747 - +0.4 297,773 - +0.3 297,796 + -0.4 297,813 + -0.4 297,814 + -0.5 297,824 + +0.7 297,824 + +0.0 297,832 - -0.9 297,832 - +0.7 297,833 - -0.8 297,847 + -0.3 297,886 + TX73_001410 0.13 +0.4 297,916 + TX73_001410 0.15 -0.1 297,924 - TX73_001410 0.16 -0.9 297,924 - TX73_001410 0.16 +0.2 297,981 - TX73_001410 0.21 +1.4 297,986 - TX73_001410 0.21 -0.1 298,011 + TX73_001410 0.23 +0.1 298,028 + TX73_001410 0.25 +0.3 298,036 - TX73_001410 0.25 +0.5 298,078 + TX73_001410 0.29 -0.7 298,083 - TX73_001410 0.29 +0.6 298,086 - TX73_001410 0.29 -0.3 298,123 + TX73_001410 0.32 +0.1 298,159 + TX73_001410 0.35 -0.2 298,167 - TX73_001410 0.36 -0.3 298,176 - TX73_001410 0.37 -0.1 298,208 + TX73_001410 0.39 -0.9 298,249 + TX73_001410 0.43 -0.2 298,266 + TX73_001410 0.44 -0.2 298,269 - TX73_001410 0.44 -0.8 298,269 - TX73_001410 0.44 +0.4 298,269 - TX73_001410 0.44 -0.1 298,305 + TX73_001410 0.47 +0.3 298,312 + TX73_001410 0.48 +0.2 298,318 + TX73_001410 0.48 -0.2 298,326 - TX73_001410 0.49 -0.5 298,328 - TX73_001410 0.49 +0.5 298,341 + TX73_001410 0.50 -0.9 298,354 + TX73_001410 0.51 -0.1 298,408 - TX73_001410 0.55 -0.1 298,433 + TX73_001410 0.57 -0.2 298,433 + TX73_001410 0.57 +0.0 298,433 - TX73_001410 0.57 +0.2 298,461 + TX73_001410 0.60 +0.5 298,470 + TX73_001410 0.60 +0.2 298,501 + TX73_001410 0.63 +0.7 298,504 - TX73_001410 0.63 +0.4 298,504 - TX73_001410 0.63 -0.4 298,526 + TX73_001410 0.65 +0.2 298,526 + TX73_001410 0.65 -0.6 298,526 + TX73_001410 0.65 +0.2 298,538 + TX73_001410 0.66 +0.4 298,553 + TX73_001410 0.67 +0.9 298,553 + TX73_001410 0.67 -1.8 298,561 - TX73_001410 0.68 -0.2 298,567 + TX73_001410 0.68 +0.3 298,569 - TX73_001410 0.69 +0.1 298,569 - TX73_001410 0.69 -0.5 298,569 - TX73_001410 0.69 +0.0
Or see this region's nucleotide sequence