Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_001045

Experiment: starvation outgrowth control in CAAc

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntTX73_001040 and TX73_001045 are separated by 166 nucleotidesTX73_001045 and TX73_001050 are separated by 215 nucleotidesTX73_001050 and TX73_001055 overlap by 4 nucleotides TX73_001040: TX73_001040 - DUF1223 domain-containing protein, at 224,593 to 225,348 _001040 TX73_001045: TX73_001045 - aconitate hydratase AcnA, at 225,515 to 228,232 _001045 TX73_001050: TX73_001050 - heme ABC exporter ATP-binding protein CcmA, at 228,448 to 229,050 _001050 TX73_001055: TX73_001055 - heme exporter protein CcmB, at 229,047 to 229,715 _001055 Position (kb) 225 226 227 228 229Strain fitness (log2 ratio) -2 -1 0 1at 224.531 kb on - strandat 224.531 kb on - strandat 224.531 kb on - strandat 224.538 kb on + strandat 224.538 kb on + strandat 224.538 kb on + strandat 224.538 kb on + strandat 224.538 kb on + strandat 224.538 kb on + strandat 224.543 kb on + strandat 224.543 kb on + strandat 224.545 kb on - strandat 224.546 kb on - strandat 224.546 kb on - strandat 224.551 kb on + strandat 224.551 kb on + strandat 224.551 kb on - strandat 224.551 kb on - strandat 224.551 kb on - strandat 224.556 kb on + strandat 224.559 kb on - strandat 224.582 kb on + strandat 224.597 kb on - strandat 224.613 kb on - strandat 224.615 kb on + strandat 224.615 kb on + strandat 224.623 kb on - strandat 224.623 kb on - strandat 224.644 kb on + strandat 224.650 kb on + strandat 224.658 kb on - strandat 224.680 kb on - strand, within TX73_001040at 224.711 kb on + strand, within TX73_001040at 224.711 kb on + strand, within TX73_001040at 224.719 kb on - strand, within TX73_001040at 224.719 kb on - strand, within TX73_001040at 224.719 kb on - strand, within TX73_001040at 224.719 kb on - strand, within TX73_001040at 224.719 kb on - strand, within TX73_001040at 224.719 kb on - strand, within TX73_001040at 224.729 kb on - strand, within TX73_001040at 224.734 kb on - strand, within TX73_001040at 224.744 kb on + strand, within TX73_001040at 224.746 kb on - strand, within TX73_001040at 224.752 kb on - strand, within TX73_001040at 224.752 kb on - strand, within TX73_001040at 224.765 kb on + strand, within TX73_001040at 224.772 kb on + strand, within TX73_001040at 224.773 kb on - strand, within TX73_001040at 224.773 kb on - strand, within TX73_001040at 224.825 kb on + strand, within TX73_001040at 224.825 kb on + strand, within TX73_001040at 224.825 kb on + strand, within TX73_001040at 224.825 kb on + strand, within TX73_001040at 224.825 kb on + strand, within TX73_001040at 224.833 kb on - strand, within TX73_001040at 224.833 kb on - strand, within TX73_001040at 224.833 kb on - strand, within TX73_001040at 224.842 kb on + strand, within TX73_001040at 224.842 kb on + strand, within TX73_001040at 224.851 kb on - strand, within TX73_001040at 224.867 kb on + strand, within TX73_001040at 224.867 kb on + strand, within TX73_001040at 224.867 kb on + strand, within TX73_001040at 224.872 kb on + strand, within TX73_001040at 224.880 kb on - strand, within TX73_001040at 224.929 kb on + strand, within TX73_001040at 224.929 kb on + strand, within TX73_001040at 224.939 kb on + strand, within TX73_001040at 224.939 kb on + strand, within TX73_001040at 224.939 kb on + strand, within TX73_001040at 224.939 kb on + strand, within TX73_001040at 224.939 kb on + strand, within TX73_001040at 224.939 kb on + strand, within TX73_001040at 224.946 kb on - strand, within TX73_001040at 224.946 kb on - strand, within TX73_001040at 224.946 kb on - strand, within TX73_001040at 224.947 kb on - strand, within TX73_001040at 224.947 kb on - strand, within TX73_001040at 224.947 kb on - strand, within TX73_001040at 224.954 kb on + strand, within TX73_001040at 224.974 kb on - strand, within TX73_001040at 224.974 kb on - strand, within TX73_001040at 224.988 kb on - strand, within TX73_001040at 225.019 kb on + strand, within TX73_001040at 225.026 kb on + strand, within TX73_001040at 225.030 kb on - strand, within TX73_001040at 225.031 kb on + strand, within TX73_001040at 225.033 kb on + strand, within TX73_001040at 225.033 kb on + strand, within TX73_001040at 225.034 kb on - strand, within TX73_001040at 225.041 kb on - strand, within TX73_001040at 225.041 kb on - strand, within TX73_001040at 225.041 kb on - strand, within TX73_001040at 225.056 kb on - strand, within TX73_001040at 225.070 kb on + strand, within TX73_001040at 225.092 kb on + strand, within TX73_001040at 225.132 kb on - strand, within TX73_001040at 225.140 kb on - strand, within TX73_001040at 225.140 kb on - strand, within TX73_001040at 225.153 kb on + strand, within TX73_001040at 225.153 kb on + strand, within TX73_001040at 225.153 kb on + strand, within TX73_001040at 225.161 kb on - strand, within TX73_001040at 225.226 kb on + strand, within TX73_001040at 225.254 kb on + strand, within TX73_001040at 225.259 kb on + strand, within TX73_001040at 225.262 kb on - strand, within TX73_001040at 225.293 kb on + strandat 225.301 kb on - strandat 225.305 kb on - strandat 225.320 kb on - strandat 225.341 kb on - strandat 225.379 kb on + strandat 225.379 kb on + strandat 225.387 kb on - strandat 225.412 kb on - strandat 225.440 kb on + strandat 225.443 kb on - strandat 225.477 kb on + strandat 225.485 kb on - strandat 225.506 kb on + strandat 225.525 kb on + strandat 225.525 kb on + strandat 225.536 kb on - strandat 228.270 kb on + strandat 228.272 kb on + strandat 228.280 kb on - strandat 228.280 kb on - strandat 228.284 kb on + strandat 228.292 kb on - strandat 228.321 kb on - strandat 228.330 kb on + strandat 228.333 kb on - strandat 228.409 kb on - strandat 228.414 kb on - strandat 228.445 kb on - strandat 228.445 kb on - strandat 229.032 kb on + strandat 229.043 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction starvation outgrowth control in CAAc
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224,531 - +0.3
224,531 - +1.0
224,531 - -0.1
224,538 + +0.0
224,538 + +0.1
224,538 + -0.0
224,538 + -0.2
224,538 + -0.1
224,538 + -0.4
224,543 + +0.2
224,543 + -0.2
224,545 - -1.2
224,546 - -0.2
224,546 - +0.0
224,551 + -0.2
224,551 + +0.7
224,551 - -0.3
224,551 - -0.9
224,551 - -0.2
224,556 + +0.4
224,559 - -0.2
224,582 + -0.2
224,597 - -0.3
224,613 - +0.4
224,615 + -0.3
224,615 + -0.5
224,623 - +0.6
224,623 - +0.3
224,644 + -0.4
224,650 + +0.6
224,658 - -1.6
224,680 - TX73_001040 0.12 -0.9
224,711 + TX73_001040 0.16 -0.5
224,711 + TX73_001040 0.16 -0.0
224,719 - TX73_001040 0.17 -0.1
224,719 - TX73_001040 0.17 -1.0
224,719 - TX73_001040 0.17 +1.7
224,719 - TX73_001040 0.17 +0.7
224,719 - TX73_001040 0.17 -0.3
224,719 - TX73_001040 0.17 -0.1
224,729 - TX73_001040 0.18 +0.7
224,734 - TX73_001040 0.19 +0.4
224,744 + TX73_001040 0.20 -0.6
224,746 - TX73_001040 0.20 -0.6
224,752 - TX73_001040 0.21 -0.0
224,752 - TX73_001040 0.21 +0.2
224,765 + TX73_001040 0.23 -0.5
224,772 + TX73_001040 0.24 +0.3
224,773 - TX73_001040 0.24 +0.9
224,773 - TX73_001040 0.24 -1.0
224,825 + TX73_001040 0.31 -0.4
224,825 + TX73_001040 0.31 -0.4
224,825 + TX73_001040 0.31 +0.3
224,825 + TX73_001040 0.31 +0.4
224,825 + TX73_001040 0.31 -0.1
224,833 - TX73_001040 0.32 +0.3
224,833 - TX73_001040 0.32 +0.6
224,833 - TX73_001040 0.32 +0.6
224,842 + TX73_001040 0.33 -0.0
224,842 + TX73_001040 0.33 +0.5
224,851 - TX73_001040 0.34 +0.9
224,867 + TX73_001040 0.36 +0.5
224,867 + TX73_001040 0.36 -0.8
224,867 + TX73_001040 0.36 +0.4
224,872 + TX73_001040 0.37 -0.3
224,880 - TX73_001040 0.38 +0.5
224,929 + TX73_001040 0.44 -0.9
224,929 + TX73_001040 0.44 +0.0
224,939 + TX73_001040 0.46 -0.4
224,939 + TX73_001040 0.46 +0.5
224,939 + TX73_001040 0.46 -0.2
224,939 + TX73_001040 0.46 -0.1
224,939 + TX73_001040 0.46 +0.9
224,939 + TX73_001040 0.46 +0.1
224,946 - TX73_001040 0.47 -0.1
224,946 - TX73_001040 0.47 -0.2
224,946 - TX73_001040 0.47 -0.8
224,947 - TX73_001040 0.47 -0.0
224,947 - TX73_001040 0.47 +0.4
224,947 - TX73_001040 0.47 +1.2
224,954 + TX73_001040 0.48 -1.1
224,974 - TX73_001040 0.50 -1.4
224,974 - TX73_001040 0.50 -0.2
224,988 - TX73_001040 0.52 +0.7
225,019 + TX73_001040 0.56 +0.4
225,026 + TX73_001040 0.57 +0.1
225,030 - TX73_001040 0.58 -0.1
225,031 + TX73_001040 0.58 +0.0
225,033 + TX73_001040 0.58 +1.4
225,033 + TX73_001040 0.58 +1.4
225,034 - TX73_001040 0.58 +0.8
225,041 - TX73_001040 0.59 +0.4
225,041 - TX73_001040 0.59 -0.2
225,041 - TX73_001040 0.59 +0.0
225,056 - TX73_001040 0.61 +0.6
225,070 + TX73_001040 0.63 -0.8
225,092 + TX73_001040 0.66 -2.1
225,132 - TX73_001040 0.71 -1.1
225,140 - TX73_001040 0.72 +0.4
225,140 - TX73_001040 0.72 +0.4
225,153 + TX73_001040 0.74 +0.8
225,153 + TX73_001040 0.74 +0.4
225,153 + TX73_001040 0.74 -0.5
225,161 - TX73_001040 0.75 -0.4
225,226 + TX73_001040 0.84 +0.6
225,254 + TX73_001040 0.87 +0.6
225,259 + TX73_001040 0.88 +0.3
225,262 - TX73_001040 0.88 +0.2
225,293 + -0.1
225,301 - -0.4
225,305 - +0.9
225,320 - +0.4
225,341 - -0.7
225,379 + -1.2
225,379 + +0.2
225,387 - -0.7
225,412 - -0.3
225,440 + -0.6
225,443 - +0.1
225,477 + -0.7
225,485 - -0.3
225,506 + +0.4
225,525 + +0.1
225,525 + -1.0
225,536 - -0.2
228,270 + -0.5
228,272 + -0.7
228,280 - -1.6
228,280 - +0.2
228,284 + -1.0
228,292 - -0.4
228,321 - -1.1
228,330 + +0.7
228,333 - +1.3
228,409 - -0.9
228,414 - +0.6
228,445 - +0.9
228,445 - -0.1
229,032 + -0.7
229,043 + -0.1

Or see this region's nucleotide sequence