Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_000225

Experiment: starvation outgrowth control in CAAc

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntTX73_000215 and TX73_000220 overlap by 52 nucleotidesTX73_000220 and TX73_000225 are separated by 199 nucleotidesTX73_000225 and TX73_000230 are separated by 49 nucleotides TX73_000215: TX73_000215 - tRNA epoxyqueuosine(34) reductase QueG, at 48,211 to 49,419 _000215 TX73_000220: TX73_000220 - glutathione S-transferase family protein, at 49,368 to 50,060 _000220 TX73_000225: TX73_000225 - undecaprenyl-diphosphate phosphatase, at 50,260 to 51,066 _000225 TX73_000230: TX73_000230 - complex I NDUFA9 subunit family protein, at 51,116 to 52,081 _000230 Position (kb) 50 51 52Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 49.278 kb on + strand, within TX73_000215at 49.278 kb on + strand, within TX73_000215at 49.286 kb on - strand, within TX73_000215at 49.286 kb on - strand, within TX73_000215at 49.286 kb on - strand, within TX73_000215at 49.300 kb on + strandat 49.300 kb on - strandat 49.334 kb on + strandat 49.342 kb on - strandat 49.348 kb on + strandat 49.365 kb on - strandat 50.059 kb on - strandat 50.062 kb on - strandat 50.067 kb on - strandat 50.072 kb on - strandat 50.072 kb on - strandat 50.074 kb on + strandat 50.090 kb on - strandat 50.090 kb on - strandat 50.120 kb on + strandat 50.126 kb on - strandat 50.131 kb on + strandat 50.135 kb on + strandat 50.136 kb on + strandat 50.139 kb on - strandat 50.141 kb on + strandat 50.148 kb on - strandat 50.195 kb on + strandat 50.203 kb on - strandat 50.204 kb on - strandat 50.206 kb on - strandat 50.209 kb on + strandat 50.216 kb on + strandat 50.240 kb on + strandat 50.240 kb on - strandat 50.250 kb on + strandat 50.250 kb on + strandat 50.255 kb on + strandat 50.274 kb on + strandat 50.274 kb on + strandat 50.274 kb on + strandat 50.282 kb on - strandat 50.282 kb on - strandat 51.046 kb on - strandat 51.053 kb on + strandat 51.061 kb on - strandat 51.063 kb on + strandat 51.089 kb on + strandat 51.089 kb on + strandat 51.089 kb on + strandat 51.090 kb on + strandat 51.097 kb on - strandat 51.098 kb on - strandat 51.098 kb on - strandat 51.098 kb on - strandat 51.102 kb on + strandat 51.123 kb on + strandat 51.131 kb on - strandat 51.139 kb on + strandat 51.152 kb on - strandat 51.170 kb on - strandat 51.170 kb on - strandat 51.194 kb on - strandat 51.203 kb on + strandat 51.217 kb on + strand, within TX73_000230at 51.225 kb on - strand, within TX73_000230at 51.225 kb on - strand, within TX73_000230at 51.225 kb on - strand, within TX73_000230at 51.250 kb on - strand, within TX73_000230at 51.280 kb on + strand, within TX73_000230at 51.292 kb on + strand, within TX73_000230at 51.299 kb on - strand, within TX73_000230at 51.312 kb on + strand, within TX73_000230at 51.334 kb on + strand, within TX73_000230at 51.357 kb on + strand, within TX73_000230at 51.374 kb on + strand, within TX73_000230at 51.378 kb on - strand, within TX73_000230at 51.388 kb on + strand, within TX73_000230at 51.424 kb on + strand, within TX73_000230at 51.432 kb on - strand, within TX73_000230at 51.432 kb on - strand, within TX73_000230at 51.450 kb on + strand, within TX73_000230at 51.456 kb on + strand, within TX73_000230at 51.456 kb on + strand, within TX73_000230at 51.458 kb on - strand, within TX73_000230at 51.461 kb on + strand, within TX73_000230at 51.464 kb on - strand, within TX73_000230at 51.464 kb on - strand, within TX73_000230at 51.514 kb on - strand, within TX73_000230at 51.515 kb on - strand, within TX73_000230at 51.534 kb on + strand, within TX73_000230at 51.548 kb on - strand, within TX73_000230at 51.555 kb on + strand, within TX73_000230at 51.555 kb on + strand, within TX73_000230at 51.584 kb on - strand, within TX73_000230at 51.584 kb on - strand, within TX73_000230at 51.584 kb on - strand, within TX73_000230at 51.590 kb on + strand, within TX73_000230at 51.598 kb on + strand, within TX73_000230at 51.598 kb on + strand, within TX73_000230at 51.606 kb on - strand, within TX73_000230at 51.621 kb on + strand, within TX73_000230at 51.621 kb on + strand, within TX73_000230at 51.629 kb on + strand, within TX73_000230at 51.640 kb on - strand, within TX73_000230at 51.646 kb on - strand, within TX73_000230at 51.654 kb on + strand, within TX73_000230at 51.655 kb on + strand, within TX73_000230at 51.677 kb on + strand, within TX73_000230at 51.683 kb on - strand, within TX73_000230at 51.683 kb on - strand, within TX73_000230at 51.683 kb on - strand, within TX73_000230at 51.683 kb on - strand, within TX73_000230at 51.693 kb on - strand, within TX73_000230at 51.728 kb on + strand, within TX73_000230at 51.728 kb on + strand, within TX73_000230at 51.733 kb on + strand, within TX73_000230at 51.736 kb on + strand, within TX73_000230at 51.736 kb on + strand, within TX73_000230at 51.736 kb on + strand, within TX73_000230at 51.736 kb on + strand, within TX73_000230at 51.736 kb on + strand, within TX73_000230at 51.736 kb on - strand, within TX73_000230at 51.741 kb on - strand, within TX73_000230at 51.744 kb on - strand, within TX73_000230at 51.744 kb on - strand, within TX73_000230at 51.744 kb on - strand, within TX73_000230at 51.751 kb on - strand, within TX73_000230at 51.756 kb on - strand, within TX73_000230at 51.757 kb on - strand, within TX73_000230at 51.781 kb on + strand, within TX73_000230at 51.783 kb on + strand, within TX73_000230at 51.783 kb on + strand, within TX73_000230at 51.783 kb on + strand, within TX73_000230at 51.788 kb on + strand, within TX73_000230at 51.788 kb on + strand, within TX73_000230at 51.788 kb on + strand, within TX73_000230at 51.788 kb on + strand, within TX73_000230at 51.788 kb on + strand, within TX73_000230at 51.788 kb on + strand, within TX73_000230at 51.788 kb on + strand, within TX73_000230at 51.788 kb on + strand, within TX73_000230at 51.788 kb on + strand, within TX73_000230at 51.788 kb on + strand, within TX73_000230at 51.788 kb on + strand, within TX73_000230at 51.788 kb on + strand, within TX73_000230at 51.788 kb on + strand, within TX73_000230at 51.788 kb on + strand, within TX73_000230at 51.788 kb on + strand, within TX73_000230at 51.788 kb on + strand, within TX73_000230at 51.788 kb on + strand, within TX73_000230at 51.788 kb on + strand, within TX73_000230at 51.788 kb on + strand, within TX73_000230at 51.788 kb on + strand, within TX73_000230at 51.788 kb on + strand, within TX73_000230at 51.789 kb on - strand, within TX73_000230at 51.791 kb on - strand, within TX73_000230at 51.791 kb on - strand, within TX73_000230at 51.796 kb on - strand, within TX73_000230at 51.796 kb on - strand, within TX73_000230at 51.796 kb on - strand, within TX73_000230at 51.796 kb on - strand, within TX73_000230at 51.796 kb on - strand, within TX73_000230at 51.796 kb on - strand, within TX73_000230at 51.796 kb on - strand, within TX73_000230at 51.796 kb on - strand, within TX73_000230at 51.796 kb on - strand, within TX73_000230at 51.796 kb on - strand, within TX73_000230at 51.796 kb on - strand, within TX73_000230at 51.796 kb on - strand, within TX73_000230at 51.796 kb on - strand, within TX73_000230at 51.796 kb on - strand, within TX73_000230at 51.796 kb on - strand, within TX73_000230at 51.796 kb on - strand, within TX73_000230at 51.796 kb on - strand, within TX73_000230at 51.796 kb on - strand, within TX73_000230at 51.796 kb on - strand, within TX73_000230at 51.796 kb on - strand, within TX73_000230at 51.798 kb on + strand, within TX73_000230at 51.827 kb on - strand, within TX73_000230at 51.835 kb on + strand, within TX73_000230at 51.839 kb on - strand, within TX73_000230at 51.853 kb on + strand, within TX73_000230at 51.883 kb on + strand, within TX73_000230at 51.891 kb on - strand, within TX73_000230at 51.891 kb on - strand, within TX73_000230at 51.893 kb on + strand, within TX73_000230at 51.896 kb on - strand, within TX73_000230at 51.902 kb on + strand, within TX73_000230at 51.910 kb on - strand, within TX73_000230at 51.912 kb on + strand, within TX73_000230at 51.912 kb on + strand, within TX73_000230at 51.912 kb on + strand, within TX73_000230at 51.912 kb on + strand, within TX73_000230at 51.912 kb on + strand, within TX73_000230at 51.912 kb on + strand, within TX73_000230at 51.912 kb on + strand, within TX73_000230at 51.912 kb on + strand, within TX73_000230at 51.912 kb on + strand, within TX73_000230at 51.912 kb on + strand, within TX73_000230at 51.917 kb on + strand, within TX73_000230at 51.917 kb on + strand, within TX73_000230at 51.920 kb on - strand, within TX73_000230at 51.920 kb on - strand, within TX73_000230at 51.920 kb on - strand, within TX73_000230at 51.920 kb on - strand, within TX73_000230at 51.920 kb on - strand, within TX73_000230at 51.920 kb on - strand, within TX73_000230at 51.920 kb on - strand, within TX73_000230at 51.920 kb on - strand, within TX73_000230at 51.920 kb on - strand, within TX73_000230at 51.922 kb on + strand, within TX73_000230at 51.930 kb on + strand, within TX73_000230at 51.958 kb on + strand, within TX73_000230at 51.973 kb on + strand, within TX73_000230at 52.032 kb on + strandat 52.033 kb on + strandat 52.034 kb on + strandat 52.041 kb on - strandat 52.043 kb on + strandat 52.043 kb on + strandat 52.051 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction starvation outgrowth control in CAAc
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49,278 + TX73_000215 0.88 +0.1
49,278 + TX73_000215 0.88 -0.0
49,286 - TX73_000215 0.89 +0.4
49,286 - TX73_000215 0.89 -0.1
49,286 - TX73_000215 0.89 -0.3
49,300 + +0.3
49,300 - +0.2
49,334 + +0.2
49,342 - -0.2
49,348 + -2.9
49,365 - -0.4
50,059 - -0.1
50,062 - +0.2
50,067 - +0.2
50,072 - -0.9
50,072 - +1.0
50,074 + -0.3
50,090 - -1.0
50,090 - +0.6
50,120 + +0.6
50,126 - -0.6
50,131 + +0.4
50,135 + +3.0
50,136 + -0.6
50,139 - +0.9
50,141 + -0.2
50,148 - +0.4
50,195 + +0.2
50,203 - -0.1
50,204 - +0.4
50,206 - -0.3
50,209 + -0.0
50,216 + +0.4
50,240 + -0.1
50,240 - -0.7
50,250 + +0.1
50,250 + +0.4
50,255 + -0.3
50,274 + -0.3
50,274 + -0.5
50,274 + -0.3
50,282 - -0.0
50,282 - +0.7
51,046 - -0.2
51,053 + -0.2
51,061 - -1.9
51,063 + +0.0
51,089 + +0.1
51,089 + -0.3
51,089 + +0.9
51,090 + -1.3
51,097 - -1.1
51,098 - +0.6
51,098 - -0.4
51,098 - -0.6
51,102 + +1.4
51,123 + +0.0
51,131 - -0.1
51,139 + -0.4
51,152 - -0.3
51,170 - -0.7
51,170 - +1.2
51,194 - +0.1
51,203 + -1.5
51,217 + TX73_000230 0.10 +0.7
51,225 - TX73_000230 0.11 +1.2
51,225 - TX73_000230 0.11 -1.0
51,225 - TX73_000230 0.11 +1.3
51,250 - TX73_000230 0.14 +0.4
51,280 + TX73_000230 0.17 -0.9
51,292 + TX73_000230 0.18 -0.8
51,299 - TX73_000230 0.19 +0.0
51,312 + TX73_000230 0.20 -0.5
51,334 + TX73_000230 0.23 +1.0
51,357 + TX73_000230 0.25 -0.2
51,374 + TX73_000230 0.27 +0.1
51,378 - TX73_000230 0.27 +0.7
51,388 + TX73_000230 0.28 +0.2
51,424 + TX73_000230 0.32 +0.5
51,432 - TX73_000230 0.33 +0.1
51,432 - TX73_000230 0.33 -0.1
51,450 + TX73_000230 0.35 +0.3
51,456 + TX73_000230 0.35 +0.3
51,456 + TX73_000230 0.35 +2.1
51,458 - TX73_000230 0.35 +0.9
51,461 + TX73_000230 0.36 +0.1
51,464 - TX73_000230 0.36 +0.9
51,464 - TX73_000230 0.36 +0.7
51,514 - TX73_000230 0.41 +0.4
51,515 - TX73_000230 0.41 -0.2
51,534 + TX73_000230 0.43 -1.7
51,548 - TX73_000230 0.45 +0.2
51,555 + TX73_000230 0.45 -0.1
51,555 + TX73_000230 0.45 +0.2
51,584 - TX73_000230 0.48 +0.6
51,584 - TX73_000230 0.48 -0.4
51,584 - TX73_000230 0.48 -2.1
51,590 + TX73_000230 0.49 -1.4
51,598 + TX73_000230 0.50 +0.2
51,598 + TX73_000230 0.50 +0.1
51,606 - TX73_000230 0.51 -0.3
51,621 + TX73_000230 0.52 +0.3
51,621 + TX73_000230 0.52 +0.2
51,629 + TX73_000230 0.53 -0.2
51,640 - TX73_000230 0.54 -0.1
51,646 - TX73_000230 0.55 +1.4
51,654 + TX73_000230 0.56 +0.1
51,655 + TX73_000230 0.56 -0.8
51,677 + TX73_000230 0.58 -0.3
51,683 - TX73_000230 0.59 -0.6
51,683 - TX73_000230 0.59 -1.1
51,683 - TX73_000230 0.59 +1.2
51,683 - TX73_000230 0.59 -0.4
51,693 - TX73_000230 0.60 +0.8
51,728 + TX73_000230 0.63 +0.8
51,728 + TX73_000230 0.63 +0.4
51,733 + TX73_000230 0.64 -0.9
51,736 + TX73_000230 0.64 -0.2
51,736 + TX73_000230 0.64 +0.2
51,736 + TX73_000230 0.64 +0.1
51,736 + TX73_000230 0.64 -0.6
51,736 + TX73_000230 0.64 -0.9
51,736 - TX73_000230 0.64 -0.8
51,741 - TX73_000230 0.65 -0.9
51,744 - TX73_000230 0.65 +0.0
51,744 - TX73_000230 0.65 +0.3
51,744 - TX73_000230 0.65 -0.2
51,751 - TX73_000230 0.66 +0.2
51,756 - TX73_000230 0.66 -0.0
51,757 - TX73_000230 0.66 +0.2
51,781 + TX73_000230 0.69 +1.0
51,783 + TX73_000230 0.69 -0.5
51,783 + TX73_000230 0.69 +0.4
51,783 + TX73_000230 0.69 -1.4
51,788 + TX73_000230 0.70 -0.6
51,788 + TX73_000230 0.70 +0.2
51,788 + TX73_000230 0.70 -0.0
51,788 + TX73_000230 0.70 -1.4
51,788 + TX73_000230 0.70 +0.9
51,788 + TX73_000230 0.70 -0.2
51,788 + TX73_000230 0.70 +0.3
51,788 + TX73_000230 0.70 +1.4
51,788 + TX73_000230 0.70 +0.9
51,788 + TX73_000230 0.70 -0.4
51,788 + TX73_000230 0.70 -0.1
51,788 + TX73_000230 0.70 -0.3
51,788 + TX73_000230 0.70 +0.6
51,788 + TX73_000230 0.70 +0.4
51,788 + TX73_000230 0.70 -0.5
51,788 + TX73_000230 0.70 -0.3
51,788 + TX73_000230 0.70 +0.7
51,788 + TX73_000230 0.70 -0.9
51,788 + TX73_000230 0.70 -0.2
51,788 + TX73_000230 0.70 -0.0
51,788 + TX73_000230 0.70 +0.7
51,789 - TX73_000230 0.70 +0.4
51,791 - TX73_000230 0.70 -0.0
51,791 - TX73_000230 0.70 +0.1
51,796 - TX73_000230 0.70 +0.1
51,796 - TX73_000230 0.70 +1.1
51,796 - TX73_000230 0.70 +0.3
51,796 - TX73_000230 0.70 +0.7
51,796 - TX73_000230 0.70 +0.8
51,796 - TX73_000230 0.70 -0.2
51,796 - TX73_000230 0.70 +0.2
51,796 - TX73_000230 0.70 +0.0
51,796 - TX73_000230 0.70 +0.0
51,796 - TX73_000230 0.70 +0.1
51,796 - TX73_000230 0.70 +1.4
51,796 - TX73_000230 0.70 +0.3
51,796 - TX73_000230 0.70 -0.8
51,796 - TX73_000230 0.70 +0.5
51,796 - TX73_000230 0.70 +0.2
51,796 - TX73_000230 0.70 +2.0
51,796 - TX73_000230 0.70 -0.7
51,796 - TX73_000230 0.70 +0.3
51,796 - TX73_000230 0.70 +0.2
51,796 - TX73_000230 0.70 +0.1
51,798 + TX73_000230 0.71 +0.7
51,827 - TX73_000230 0.74 -0.8
51,835 + TX73_000230 0.74 -0.2
51,839 - TX73_000230 0.75 +0.5
51,853 + TX73_000230 0.76 +0.5
51,883 + TX73_000230 0.79 +0.8
51,891 - TX73_000230 0.80 -1.1
51,891 - TX73_000230 0.80 +0.2
51,893 + TX73_000230 0.80 -0.1
51,896 - TX73_000230 0.81 +0.5
51,902 + TX73_000230 0.81 +0.4
51,910 - TX73_000230 0.82 +0.4
51,912 + TX73_000230 0.82 -0.3
51,912 + TX73_000230 0.82 +0.9
51,912 + TX73_000230 0.82 +0.1
51,912 + TX73_000230 0.82 +0.7
51,912 + TX73_000230 0.82 -0.3
51,912 + TX73_000230 0.82 -0.2
51,912 + TX73_000230 0.82 +0.1
51,912 + TX73_000230 0.82 +0.3
51,912 + TX73_000230 0.82 -0.5
51,912 + TX73_000230 0.82 +0.3
51,917 + TX73_000230 0.83 -0.4
51,917 + TX73_000230 0.83 -1.3
51,920 - TX73_000230 0.83 +0.6
51,920 - TX73_000230 0.83 -0.2
51,920 - TX73_000230 0.83 -0.1
51,920 - TX73_000230 0.83 -1.6
51,920 - TX73_000230 0.83 -0.4
51,920 - TX73_000230 0.83 +1.0
51,920 - TX73_000230 0.83 -0.6
51,920 - TX73_000230 0.83 -1.1
51,920 - TX73_000230 0.83 -0.9
51,922 + TX73_000230 0.83 -0.2
51,930 + TX73_000230 0.84 +0.2
51,958 + TX73_000230 0.87 -0.2
51,973 + TX73_000230 0.89 -0.2
52,032 + -2.7
52,033 + -0.1
52,034 + -0.5
52,041 - -0.8
52,043 + -0.0
52,043 + -0.2
52,051 - -0.6

Or see this region's nucleotide sequence