Experiment: MoLS4 without vitamins
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU2944 and DVU2945 are separated by 38 nucleotides DVU2945 and DVU2946 are separated by 390 nucleotides DVU2946 and DVU2947 are separated by 83 nucleotides
DVU2944: DVU2944 - ErfK/YbiS/YcfS/YnhG family protein (TIGR), at 3,047,845 to 3,049,134
DVU2944
DVU2945: DVU2945 - conserved domain protein (TIGR), at 3,049,173 to 3,050,030
DVU2945
DVU2946: DVU2946 - hypothetical protein (TIGR), at 3,050,421 to 3,050,663
DVU2946
DVU2947: DVU2947 - anaerobic ribonucleoside-triphosphate reductase, putative (TIGR), at 3,050,747 to 3,052,816
DVU2947
Position (kb)
3049
3050
3051 Strain fitness (log2 ratio)
-2
-1
0
1 at 3048.197 kb on + strand, within DVU2944 at 3048.266 kb on + strand, within DVU2944 at 3048.349 kb on - strand, within DVU2944 at 3048.396 kb on - strand, within DVU2944 at 3048.403 kb on + strand, within DVU2944 at 3048.468 kb on + strand, within DVU2944 at 3048.526 kb on + strand, within DVU2944 at 3048.561 kb on + strand, within DVU2944 at 3048.561 kb on + strand, within DVU2944 at 3048.573 kb on + strand, within DVU2944 at 3048.581 kb on - strand, within DVU2944 at 3048.597 kb on - strand, within DVU2944 at 3048.599 kb on + strand, within DVU2944 at 3048.599 kb on + strand, within DVU2944 at 3048.607 kb on - strand, within DVU2944 at 3048.648 kb on + strand, within DVU2944 at 3048.656 kb on - strand, within DVU2944 at 3048.667 kb on - strand, within DVU2944 at 3048.827 kb on + strand, within DVU2944 at 3048.847 kb on - strand, within DVU2944 at 3049.073 kb on + strand at 3049.147 kb on - strand at 3049.192 kb on + strand at 3049.266 kb on - strand, within DVU2945 at 3049.439 kb on - strand, within DVU2945 at 3049.768 kb on + strand, within DVU2945 at 3049.786 kb on - strand, within DVU2945 at 3049.934 kb on + strand, within DVU2945 at 3050.174 kb on - strand at 3050.291 kb on + strand at 3050.391 kb on - strand at 3050.391 kb on - strand at 3050.442 kb on - strand at 3050.552 kb on - strand, within DVU2946 at 3050.553 kb on - strand, within DVU2946 at 3050.557 kb on - strand, within DVU2946 at 3050.604 kb on + strand, within DVU2946 at 3050.625 kb on - strand, within DVU2946 at 3050.667 kb on + strand at 3050.861 kb on + strand at 3050.869 kb on - strand at 3050.905 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoLS4 without vitamins remove 3,048,197 + DVU2944 0.27 -0.4 3,048,266 + DVU2944 0.33 -0.4 3,048,349 - DVU2944 0.39 -0.8 3,048,396 - DVU2944 0.43 -0.2 3,048,403 + DVU2944 0.43 -0.3 3,048,468 + DVU2944 0.48 -0.3 3,048,526 + DVU2944 0.53 -0.2 3,048,561 + DVU2944 0.56 +0.4 3,048,561 + DVU2944 0.56 -0.4 3,048,573 + DVU2944 0.56 -2.1 3,048,581 - DVU2944 0.57 -0.5 3,048,597 - DVU2944 0.58 +0.6 3,048,599 + DVU2944 0.58 -0.6 3,048,599 + DVU2944 0.58 -1.4 3,048,607 - DVU2944 0.59 +0.1 3,048,648 + DVU2944 0.62 +0.4 3,048,656 - DVU2944 0.63 -1.5 3,048,667 - DVU2944 0.64 +0.3 3,048,827 + DVU2944 0.76 -0.0 3,048,847 - DVU2944 0.78 -0.3 3,049,073 + -0.0 3,049,147 - -0.5 3,049,192 + -0.1 3,049,266 - DVU2945 0.11 +0.1 3,049,439 - DVU2945 0.31 -0.9 3,049,768 + DVU2945 0.69 -0.8 3,049,786 - DVU2945 0.71 -2.3 3,049,934 + DVU2945 0.89 +0.0 3,050,174 - +0.0 3,050,291 + +0.4 3,050,391 - +0.2 3,050,391 - -0.4 3,050,442 - +0.6 3,050,552 - DVU2946 0.54 -0.6 3,050,553 - DVU2946 0.54 -0.1 3,050,557 - DVU2946 0.56 -2.0 3,050,604 + DVU2946 0.75 -0.4 3,050,625 - DVU2946 0.84 -0.1 3,050,667 + -0.8 3,050,861 + -0.3 3,050,869 - -0.8 3,050,905 - -0.5
Or see this region's nucleotide sequence