Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU2945

Experiment: MoLS4 without vitamins

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU2944 and DVU2945 are separated by 38 nucleotidesDVU2945 and DVU2946 are separated by 390 nucleotidesDVU2946 and DVU2947 are separated by 83 nucleotides DVU2944: DVU2944 - ErfK/YbiS/YcfS/YnhG family protein (TIGR), at 3,047,845 to 3,049,134 DVU2944 DVU2945: DVU2945 - conserved domain protein (TIGR), at 3,049,173 to 3,050,030 DVU2945 DVU2946: DVU2946 - hypothetical protein (TIGR), at 3,050,421 to 3,050,663 DVU2946 DVU2947: DVU2947 - anaerobic ribonucleoside-triphosphate reductase, putative (TIGR), at 3,050,747 to 3,052,816 DVU2947 Position (kb) 3049 3050 3051Strain fitness (log2 ratio) -2 -1 0 1at 3048.197 kb on + strand, within DVU2944at 3048.266 kb on + strand, within DVU2944at 3048.349 kb on - strand, within DVU2944at 3048.396 kb on - strand, within DVU2944at 3048.403 kb on + strand, within DVU2944at 3048.468 kb on + strand, within DVU2944at 3048.526 kb on + strand, within DVU2944at 3048.561 kb on + strand, within DVU2944at 3048.561 kb on + strand, within DVU2944at 3048.573 kb on + strand, within DVU2944at 3048.581 kb on - strand, within DVU2944at 3048.597 kb on - strand, within DVU2944at 3048.599 kb on + strand, within DVU2944at 3048.599 kb on + strand, within DVU2944at 3048.607 kb on - strand, within DVU2944at 3048.648 kb on + strand, within DVU2944at 3048.656 kb on - strand, within DVU2944at 3048.667 kb on - strand, within DVU2944at 3048.827 kb on + strand, within DVU2944at 3048.847 kb on - strand, within DVU2944at 3049.073 kb on + strandat 3049.147 kb on - strandat 3049.192 kb on + strandat 3049.266 kb on - strand, within DVU2945at 3049.439 kb on - strand, within DVU2945at 3049.768 kb on + strand, within DVU2945at 3049.786 kb on - strand, within DVU2945at 3049.934 kb on + strand, within DVU2945at 3050.174 kb on - strandat 3050.291 kb on + strandat 3050.391 kb on - strandat 3050.391 kb on - strandat 3050.442 kb on - strandat 3050.552 kb on - strand, within DVU2946at 3050.553 kb on - strand, within DVU2946at 3050.557 kb on - strand, within DVU2946at 3050.604 kb on + strand, within DVU2946at 3050.625 kb on - strand, within DVU2946at 3050.667 kb on + strandat 3050.861 kb on + strandat 3050.869 kb on - strandat 3050.905 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 without vitamins
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3,048,197 + DVU2944 0.27 -0.4
3,048,266 + DVU2944 0.33 -0.4
3,048,349 - DVU2944 0.39 -0.8
3,048,396 - DVU2944 0.43 -0.2
3,048,403 + DVU2944 0.43 -0.3
3,048,468 + DVU2944 0.48 -0.3
3,048,526 + DVU2944 0.53 -0.2
3,048,561 + DVU2944 0.56 +0.4
3,048,561 + DVU2944 0.56 -0.4
3,048,573 + DVU2944 0.56 -2.1
3,048,581 - DVU2944 0.57 -0.5
3,048,597 - DVU2944 0.58 +0.6
3,048,599 + DVU2944 0.58 -0.6
3,048,599 + DVU2944 0.58 -1.4
3,048,607 - DVU2944 0.59 +0.1
3,048,648 + DVU2944 0.62 +0.4
3,048,656 - DVU2944 0.63 -1.5
3,048,667 - DVU2944 0.64 +0.3
3,048,827 + DVU2944 0.76 -0.0
3,048,847 - DVU2944 0.78 -0.3
3,049,073 + -0.0
3,049,147 - -0.5
3,049,192 + -0.1
3,049,266 - DVU2945 0.11 +0.1
3,049,439 - DVU2945 0.31 -0.9
3,049,768 + DVU2945 0.69 -0.8
3,049,786 - DVU2945 0.71 -2.3
3,049,934 + DVU2945 0.89 +0.0
3,050,174 - +0.0
3,050,291 + +0.4
3,050,391 - +0.2
3,050,391 - -0.4
3,050,442 - +0.6
3,050,552 - DVU2946 0.54 -0.6
3,050,553 - DVU2946 0.54 -0.1
3,050,557 - DVU2946 0.56 -2.0
3,050,604 + DVU2946 0.75 -0.4
3,050,625 - DVU2946 0.84 -0.1
3,050,667 + -0.8
3,050,861 + -0.3
3,050,869 - -0.8
3,050,905 - -0.5

Or see this region's nucleotide sequence