Experiment: MoLS4 without vitamins
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt flgI and DVU0517 are separated by 1 nucleotides DVU0517 and DVU0518 are separated by 23 nucleotides DVU0518 and DVU0519 overlap by 1 nucleotides
DVU0516: flgI - flagellar P-ring protein FlgI (TIGR), at 589,056 to 590,192
flgI
DVU0517: DVU0517 - peptidase, M23/M37 family (TIGR), at 590,194 to 592,026
DVU0517
DVU0518: DVU0518 - hypothetical protein (TIGR), at 592,050 to 592,514
DVU0518
DVU0519: DVU0519 - flagellar hook-associated protein FlgK, putative (TIGR), at 592,514 to 594,610
DVU0519
Position (kb) 590
591
592
593 Strain fitness (log2 ratio) -2
-1
0
1 at 589.195 kb on - strand, within flgI at 589.209 kb on - strand, within flgI at 589.289 kb on + strand, within flgI at 589.332 kb on - strand, within flgI at 589.406 kb on + strand, within flgI at 589.446 kb on + strand, within flgI at 589.475 kb on + strand, within flgI at 589.475 kb on + strand, within flgI at 589.475 kb on + strand, within flgI at 589.481 kb on - strand, within flgI at 589.483 kb on - strand, within flgI at 589.641 kb on + strand, within flgI at 589.670 kb on - strand, within flgI at 589.672 kb on + strand, within flgI at 589.717 kb on - strand, within flgI at 589.717 kb on - strand, within flgI at 589.744 kb on - strand, within flgI at 589.826 kb on - strand, within flgI at 589.853 kb on - strand, within flgI at 589.894 kb on + strand, within flgI at 590.137 kb on - strand at 590.195 kb on + strand at 590.270 kb on + strand at 590.279 kb on + strand at 590.407 kb on + strand, within DVU0517 at 590.417 kb on + strand, within DVU0517 at 590.420 kb on - strand, within DVU0517 at 590.425 kb on + strand, within DVU0517 at 590.425 kb on - strand, within DVU0517 at 590.425 kb on - strand, within DVU0517 at 590.458 kb on - strand, within DVU0517 at 590.540 kb on - strand, within DVU0517 at 590.547 kb on + strand, within DVU0517 at 590.560 kb on - strand, within DVU0517 at 590.676 kb on + strand, within DVU0517 at 590.685 kb on - strand, within DVU0517 at 590.751 kb on - strand, within DVU0517 at 590.760 kb on + strand, within DVU0517 at 590.866 kb on + strand, within DVU0517 at 590.899 kb on + strand, within DVU0517 at 590.914 kb on + strand, within DVU0517 at 590.922 kb on - strand, within DVU0517 at 590.981 kb on + strand, within DVU0517 at 590.988 kb on + strand, within DVU0517 at 590.991 kb on - strand, within DVU0517 at 590.991 kb on - strand, within DVU0517 at 591.301 kb on + strand, within DVU0517 at 591.335 kb on - strand, within DVU0517 at 591.344 kb on + strand, within DVU0517 at 591.400 kb on - strand, within DVU0517 at 591.461 kb on - strand, within DVU0517 at 591.461 kb on - strand, within DVU0517 at 591.493 kb on - strand, within DVU0517 at 591.561 kb on - strand, within DVU0517 at 592.036 kb on + strand at 592.050 kb on + strand at 592.050 kb on + strand at 592.091 kb on + strand at 592.091 kb on + strand at 592.099 kb on - strand, within DVU0518 at 592.099 kb on - strand, within DVU0518 at 592.176 kb on - strand, within DVU0518 at 592.231 kb on - strand, within DVU0518 at 592.251 kb on + strand, within DVU0518 at 592.281 kb on + strand, within DVU0518 at 592.289 kb on - strand, within DVU0518 at 592.289 kb on - strand, within DVU0518 at 592.289 kb on - strand, within DVU0518 at 592.306 kb on - strand, within DVU0518 at 592.329 kb on + strand, within DVU0518 at 592.334 kb on + strand, within DVU0518 at 592.337 kb on - strand, within DVU0518 at 592.337 kb on - strand, within DVU0518 at 592.342 kb on - strand, within DVU0518 at 592.363 kb on - strand, within DVU0518 at 592.372 kb on + strand, within DVU0518 at 592.376 kb on + strand, within DVU0518 at 592.433 kb on + strand, within DVU0518 at 592.433 kb on + strand, within DVU0518 at 592.539 kb on - strand at 592.539 kb on - strand at 592.574 kb on + strand at 592.639 kb on - strand at 592.791 kb on - strand, within DVU0519 at 592.847 kb on + strand, within DVU0519 at 592.950 kb on - strand, within DVU0519 at 592.968 kb on + strand, within DVU0519
Per-strain Table
Position Strand Gene LocusTag Fraction MoLS4 without vitamins remove 589,195 - flgI DVU0516 0.12 -2.7 589,209 - flgI DVU0516 0.13 +0.5 589,289 + flgI DVU0516 0.20 +0.0 589,332 - flgI DVU0516 0.24 -0.4 589,406 + flgI DVU0516 0.31 +0.4 589,446 + flgI DVU0516 0.34 -0.2 589,475 + flgI DVU0516 0.37 -0.1 589,475 + flgI DVU0516 0.37 +0.3 589,475 + flgI DVU0516 0.37 -1.3 589,481 - flgI DVU0516 0.37 -1.5 589,483 - flgI DVU0516 0.38 -0.2 589,641 + flgI DVU0516 0.51 -0.2 589,670 - flgI DVU0516 0.54 -0.3 589,672 + flgI DVU0516 0.54 -0.2 589,717 - flgI DVU0516 0.58 +0.1 589,717 - flgI DVU0516 0.58 +0.5 589,744 - flgI DVU0516 0.61 -0.0 589,826 - flgI DVU0516 0.68 -0.2 589,853 - flgI DVU0516 0.70 -0.6 589,894 + flgI DVU0516 0.74 -0.1 590,137 - +0.4 590,195 + -0.3 590,270 + -0.0 590,279 + -0.2 590,407 + DVU0517 0.12 -0.5 590,417 + DVU0517 0.12 -0.2 590,420 - DVU0517 0.12 -0.3 590,425 + DVU0517 0.13 -0.7 590,425 - DVU0517 0.13 +0.6 590,425 - DVU0517 0.13 -0.2 590,458 - DVU0517 0.14 -0.1 590,540 - DVU0517 0.19 +1.2 590,547 + DVU0517 0.19 +0.0 590,560 - DVU0517 0.20 +0.7 590,676 + DVU0517 0.26 +0.2 590,685 - DVU0517 0.27 -0.6 590,751 - DVU0517 0.30 -0.1 590,760 + DVU0517 0.31 -0.1 590,866 + DVU0517 0.37 +0.0 590,899 + DVU0517 0.38 +0.1 590,914 + DVU0517 0.39 -0.2 590,922 - DVU0517 0.40 +0.5 590,981 + DVU0517 0.43 -0.2 590,988 + DVU0517 0.43 -0.1 590,991 - DVU0517 0.43 -0.5 590,991 - DVU0517 0.43 +0.1 591,301 + DVU0517 0.60 +0.5 591,335 - DVU0517 0.62 -0.1 591,344 + DVU0517 0.63 -0.6 591,400 - DVU0517 0.66 +1.0 591,461 - DVU0517 0.69 +0.1 591,461 - DVU0517 0.69 +0.2 591,493 - DVU0517 0.71 -0.1 591,561 - DVU0517 0.75 -0.2 592,036 + -0.3 592,050 + -0.9 592,050 + +1.2 592,091 + -0.0 592,091 + -0.6 592,099 - DVU0518 0.11 -0.2 592,099 - DVU0518 0.11 -0.4 592,176 - DVU0518 0.27 +0.5 592,231 - DVU0518 0.39 -0.3 592,251 + DVU0518 0.43 -0.2 592,281 + DVU0518 0.50 -0.1 592,289 - DVU0518 0.51 +0.0 592,289 - DVU0518 0.51 +0.3 592,289 - DVU0518 0.51 -0.3 592,306 - DVU0518 0.55 -0.0 592,329 + DVU0518 0.60 -0.3 592,334 + DVU0518 0.61 -1.1 592,337 - DVU0518 0.62 -0.3 592,337 - DVU0518 0.62 +0.3 592,342 - DVU0518 0.63 -0.3 592,363 - DVU0518 0.67 -1.8 592,372 + DVU0518 0.69 -0.2 592,376 + DVU0518 0.70 +0.4 592,433 + DVU0518 0.82 -0.3 592,433 + DVU0518 0.82 +0.4 592,539 - -0.2 592,539 - -0.6 592,574 + -0.3 592,639 - -0.2 592,791 - DVU0519 0.13 -0.7 592,847 + DVU0519 0.16 +0.1 592,950 - DVU0519 0.21 -0.3 592,968 + DVU0519 0.22 -0.5
Or see this region's nucleotide sequence