Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU0453

Experiment: MoLS4 without vitamins

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU0452 and DVU0453 are separated by 429 nucleotidesDVU0453 and DVU0454 are separated by 110 nucleotidesDVU0454 and DVU0455 are separated by 49 nucleotides DVU0452: DVU0452 - hypothetical protein (TIGR), at 517,716 to 518,939 DVU0452 DVU0453: DVU0453 - ATP-dependent DNA helicase, UvrD/REP family (TIGR), at 519,369 to 522,752 DVU0453 DVU0454: DVU0454 - hypothetical protein (TIGR), at 522,863 to 523,111 DVU0454 DVU0455: DVU0455 - hypothetical protein (TIGR), at 523,161 to 523,928 DVU0455 Position (kb) 519 520 521 522 523Strain fitness (log2 ratio) -2 -1 0 1at 518.406 kb on - strand, within DVU0452at 518.444 kb on + strand, within DVU0452at 518.473 kb on + strand, within DVU0452at 518.563 kb on + strand, within DVU0452at 518.618 kb on - strand, within DVU0452at 518.622 kb on + strand, within DVU0452at 518.625 kb on - strand, within DVU0452at 518.660 kb on + strand, within DVU0452at 518.668 kb on - strand, within DVU0452at 518.939 kb on - strandat 518.941 kb on + strandat 518.941 kb on + strandat 518.941 kb on + strandat 518.941 kb on + strandat 518.942 kb on + strandat 518.969 kb on - strandat 519.045 kb on - strandat 519.086 kb on + strandat 519.147 kb on - strandat 519.152 kb on + strandat 519.181 kb on - strandat 519.319 kb on - strandat 519.344 kb on - strandat 519.377 kb on + strandat 519.409 kb on + strandat 519.409 kb on + strandat 519.409 kb on + strandat 519.479 kb on - strandat 519.707 kb on - strandat 519.707 kb on - strandat 519.709 kb on - strand, within DVU0453at 519.796 kb on + strand, within DVU0453at 519.833 kb on + strand, within DVU0453at 519.872 kb on + strand, within DVU0453at 520.172 kb on + strand, within DVU0453at 520.172 kb on - strand, within DVU0453at 520.180 kb on - strand, within DVU0453at 520.201 kb on - strand, within DVU0453at 520.224 kb on + strand, within DVU0453at 520.224 kb on + strand, within DVU0453at 520.299 kb on - strand, within DVU0453at 520.336 kb on + strand, within DVU0453at 520.344 kb on - strand, within DVU0453at 520.344 kb on - strand, within DVU0453at 520.344 kb on - strand, within DVU0453at 520.344 kb on - strand, within DVU0453at 520.479 kb on - strand, within DVU0453at 520.543 kb on - strand, within DVU0453at 520.666 kb on - strand, within DVU0453at 520.713 kb on + strand, within DVU0453at 520.729 kb on - strand, within DVU0453at 520.776 kb on - strand, within DVU0453at 520.908 kb on + strand, within DVU0453at 520.958 kb on + strand, within DVU0453at 521.025 kb on + strand, within DVU0453at 521.040 kb on + strand, within DVU0453at 521.067 kb on + strand, within DVU0453at 521.075 kb on - strand, within DVU0453at 521.075 kb on - strand, within DVU0453at 521.089 kb on + strand, within DVU0453at 521.177 kb on - strand, within DVU0453at 521.188 kb on + strand, within DVU0453at 521.194 kb on - strand, within DVU0453at 521.206 kb on - strand, within DVU0453at 521.315 kb on - strand, within DVU0453at 521.337 kb on - strand, within DVU0453at 521.371 kb on + strand, within DVU0453at 521.399 kb on + strand, within DVU0453at 521.407 kb on + strand, within DVU0453at 521.415 kb on - strand, within DVU0453at 521.424 kb on + strand, within DVU0453at 521.621 kb on + strand, within DVU0453at 521.658 kb on + strand, within DVU0453at 521.868 kb on + strand, within DVU0453at 521.878 kb on - strand, within DVU0453at 521.878 kb on - strand, within DVU0453at 521.922 kb on - strand, within DVU0453at 521.946 kb on + strand, within DVU0453at 522.086 kb on + strand, within DVU0453at 522.086 kb on + strand, within DVU0453at 522.116 kb on - strand, within DVU0453at 522.263 kb on + strand, within DVU0453at 522.288 kb on + strand, within DVU0453at 522.312 kb on + strand, within DVU0453at 522.331 kb on - strand, within DVU0453at 522.390 kb on + strand, within DVU0453at 522.468 kb on - strandat 522.499 kb on - strandat 522.551 kb on + strandat 522.561 kb on + strandat 522.561 kb on + strandat 522.569 kb on - strandat 522.623 kb on - strandat 522.690 kb on + strandat 522.723 kb on - strandat 522.763 kb on + strandat 522.771 kb on - strandat 522.787 kb on + strandat 522.862 kb on - strandat 522.862 kb on - strandat 522.862 kb on - strandat 522.934 kb on - strand, within DVU0454at 522.967 kb on - strand, within DVU0454at 522.972 kb on - strand, within DVU0454at 523.022 kb on - strand, within DVU0454at 523.022 kb on - strand, within DVU0454at 523.159 kb on - strandat 523.159 kb on - strandat 523.161 kb on - strandat 523.166 kb on - strandat 523.198 kb on - strandat 523.210 kb on - strandat 523.210 kb on - strandat 523.210 kb on - strandat 523.210 kb on - strandat 523.406 kb on + strand, within DVU0455at 523.493 kb on - strand, within DVU0455at 523.505 kb on - strand, within DVU0455at 523.507 kb on - strand, within DVU0455at 523.577 kb on + strand, within DVU0455at 523.629 kb on - strand, within DVU0455at 523.676 kb on + strand, within DVU0455at 523.676 kb on + strand, within DVU0455at 523.715 kb on + strand, within DVU0455

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 without vitamins
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518,406 - DVU0452 0.56 +0.2
518,444 + DVU0452 0.59 +0.4
518,473 + DVU0452 0.62 +0.0
518,563 + DVU0452 0.69 +0.1
518,618 - DVU0452 0.74 +0.1
518,622 + DVU0452 0.74 -0.4
518,625 - DVU0452 0.74 -0.2
518,660 + DVU0452 0.77 -0.2
518,668 - DVU0452 0.78 -0.4
518,939 - +0.1
518,941 + -0.0
518,941 + +0.9
518,941 + -0.2
518,941 + -0.2
518,942 + +0.0
518,969 - +0.1
519,045 - +0.1
519,086 + -0.8
519,147 - +0.9
519,152 + -0.1
519,181 - +0.2
519,319 - +0.3
519,344 - -0.3
519,377 + -0.8
519,409 + +0.2
519,409 + +0.6
519,409 + -0.0
519,479 - -0.1
519,707 - -0.3
519,707 - -0.6
519,709 - DVU0453 0.10 +0.3
519,796 + DVU0453 0.13 -0.3
519,833 + DVU0453 0.14 -0.3
519,872 + DVU0453 0.15 +0.6
520,172 + DVU0453 0.24 +0.2
520,172 - DVU0453 0.24 -0.4
520,180 - DVU0453 0.24 +0.0
520,201 - DVU0453 0.25 -0.7
520,224 + DVU0453 0.25 -0.1
520,224 + DVU0453 0.25 -0.3
520,299 - DVU0453 0.27 +0.1
520,336 + DVU0453 0.29 -0.4
520,344 - DVU0453 0.29 +0.3
520,344 - DVU0453 0.29 +0.7
520,344 - DVU0453 0.29 +0.2
520,344 - DVU0453 0.29 -0.6
520,479 - DVU0453 0.33 -0.2
520,543 - DVU0453 0.35 -0.5
520,666 - DVU0453 0.38 -0.3
520,713 + DVU0453 0.40 -0.3
520,729 - DVU0453 0.40 -0.1
520,776 - DVU0453 0.42 +0.1
520,908 + DVU0453 0.45 +0.2
520,958 + DVU0453 0.47 +0.1
521,025 + DVU0453 0.49 -0.0
521,040 + DVU0453 0.49 -0.6
521,067 + DVU0453 0.50 +0.4
521,075 - DVU0453 0.50 -0.2
521,075 - DVU0453 0.50 -0.9
521,089 + DVU0453 0.51 -0.4
521,177 - DVU0453 0.53 -0.3
521,188 + DVU0453 0.54 -0.2
521,194 - DVU0453 0.54 -0.1
521,206 - DVU0453 0.54 +1.1
521,315 - DVU0453 0.58 -0.9
521,337 - DVU0453 0.58 +0.9
521,371 + DVU0453 0.59 -0.3
521,399 + DVU0453 0.60 +0.1
521,407 + DVU0453 0.60 +0.1
521,415 - DVU0453 0.60 -0.1
521,424 + DVU0453 0.61 +0.1
521,621 + DVU0453 0.67 -0.1
521,658 + DVU0453 0.68 +0.2
521,868 + DVU0453 0.74 -0.1
521,878 - DVU0453 0.74 +0.2
521,878 - DVU0453 0.74 -1.3
521,922 - DVU0453 0.75 +0.4
521,946 + DVU0453 0.76 +0.4
522,086 + DVU0453 0.80 -0.2
522,086 + DVU0453 0.80 +0.1
522,116 - DVU0453 0.81 -0.3
522,263 + DVU0453 0.86 -0.7
522,288 + DVU0453 0.86 -0.1
522,312 + DVU0453 0.87 -0.1
522,331 - DVU0453 0.88 +0.2
522,390 + DVU0453 0.89 -0.3
522,468 - -0.3
522,499 - +0.6
522,551 + +0.2
522,561 + -0.3
522,561 + -0.2
522,569 - +0.3
522,623 - -0.0
522,690 + +0.0
522,723 - +1.4
522,763 + -0.1
522,771 - -0.6
522,787 + +0.9
522,862 - +0.1
522,862 - +0.8
522,862 - +0.6
522,934 - DVU0454 0.29 -0.4
522,967 - DVU0454 0.42 -0.6
522,972 - DVU0454 0.44 -0.3
523,022 - DVU0454 0.64 +0.9
523,022 - DVU0454 0.64 -0.2
523,159 - +0.0
523,159 - -0.5
523,161 - -0.5
523,166 - -1.7
523,198 - -0.2
523,210 - +0.4
523,210 - -1.8
523,210 - -1.0
523,210 - +0.2
523,406 + DVU0455 0.32 +0.1
523,493 - DVU0455 0.43 -1.4
523,505 - DVU0455 0.45 -0.8
523,507 - DVU0455 0.45 -1.0
523,577 + DVU0455 0.54 -0.4
523,629 - DVU0455 0.61 -1.0
523,676 + DVU0455 0.67 +0.1
523,676 + DVU0455 0.67 -0.9
523,715 + DVU0455 0.72 +0.5

Or see this region's nucleotide sequence