Experiment: Lactate-Thiosulfate (15mM) + 0.1% Yeast Extract (MOYLThioS4)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt rfaD and DVU0482 are separated by 120 nucleotides DVU0482 and DVU0483 are separated by 299 nucleotides
DVU0481: rfaD - ADP-L-glycero-D-mannoheptose-6-epimerase (TIGR), at 547,103 to 548,074
rfaD
DVU0482: DVU0482 - sensory box histidine kinase/response regulator (TIGR), at 548,195 to 549,643
DVU0482
DVU0483: DVU0483 - DNA mismatch repair protein MutL, putative (TIGR), at 549,943 to 552,177
DVU0483
Position (kb) 548
549
550 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 548.103 kb on + strand at 548.261 kb on - strand at 548.279 kb on - strand at 548.329 kb on + strand at 548.360 kb on - strand, within DVU0482 at 548.369 kb on + strand, within DVU0482 at 548.392 kb on + strand, within DVU0482 at 548.474 kb on + strand, within DVU0482 at 548.504 kb on + strand, within DVU0482 at 548.531 kb on + strand, within DVU0482 at 548.642 kb on + strand, within DVU0482 at 548.649 kb on + strand, within DVU0482 at 548.657 kb on - strand, within DVU0482 at 548.815 kb on - strand, within DVU0482 at 548.826 kb on + strand, within DVU0482 at 548.834 kb on - strand, within DVU0482 at 548.938 kb on - strand, within DVU0482 at 548.954 kb on + strand, within DVU0482 at 549.026 kb on + strand, within DVU0482 at 549.048 kb on + strand, within DVU0482 at 549.056 kb on - strand, within DVU0482 at 549.056 kb on - strand, within DVU0482 at 549.056 kb on - strand, within DVU0482 at 549.061 kb on - strand, within DVU0482 at 549.095 kb on + strand, within DVU0482 at 549.128 kb on + strand, within DVU0482 at 549.128 kb on + strand, within DVU0482 at 549.136 kb on - strand, within DVU0482 at 549.166 kb on + strand, within DVU0482 at 549.174 kb on + strand, within DVU0482 at 549.242 kb on + strand, within DVU0482 at 549.250 kb on - strand, within DVU0482 at 549.250 kb on - strand, within DVU0482 at 549.300 kb on - strand, within DVU0482 at 549.486 kb on - strand, within DVU0482 at 549.486 kb on - strand, within DVU0482 at 549.702 kb on - strand at 549.719 kb on + strand at 549.764 kb on + strand at 549.793 kb on + strand at 549.796 kb on - strand at 549.808 kb on - strand at 549.932 kb on + strand at 549.939 kb on + strand at 549.975 kb on - strand at 549.999 kb on - strand at 549.999 kb on - strand at 550.064 kb on + strand at 550.076 kb on - strand at 550.091 kb on + strand at 550.129 kb on - strand at 550.178 kb on - strand, within DVU0483 at 550.183 kb on - strand, within DVU0483 at 550.220 kb on + strand, within DVU0483 at 550.226 kb on - strand, within DVU0483 at 550.235 kb on + strand, within DVU0483 at 550.243 kb on - strand, within DVU0483 at 550.274 kb on - strand, within DVU0483 at 550.400 kb on - strand, within DVU0483 at 550.512 kb on - strand, within DVU0483 at 550.561 kb on + strand, within DVU0483 at 550.589 kb on - strand, within DVU0483 at 550.616 kb on + strand, within DVU0483 at 550.639 kb on - strand, within DVU0483 at 550.639 kb on - strand, within DVU0483
Per-strain Table
Position Strand Gene LocusTag Fraction Lactate-Thiosulfate (15mM) + 0.1% Yeast Extract (MOYLThioS4) remove 548,103 + -0.2 548,261 - +3.0 548,279 - +0.6 548,329 + -0.2 548,360 - DVU0482 0.11 +0.2 548,369 + DVU0482 0.12 -0.0 548,392 + DVU0482 0.14 -0.0 548,474 + DVU0482 0.19 +0.1 548,504 + DVU0482 0.21 +0.1 548,531 + DVU0482 0.23 +0.3 548,642 + DVU0482 0.31 +1.4 548,649 + DVU0482 0.31 +0.5 548,657 - DVU0482 0.32 -0.8 548,815 - DVU0482 0.43 +0.2 548,826 + DVU0482 0.44 -1.7 548,834 - DVU0482 0.44 +0.8 548,938 - DVU0482 0.51 -2.8 548,954 + DVU0482 0.52 +0.2 549,026 + DVU0482 0.57 -0.2 549,048 + DVU0482 0.59 -0.2 549,056 - DVU0482 0.59 -0.3 549,056 - DVU0482 0.59 -0.7 549,056 - DVU0482 0.59 -0.2 549,061 - DVU0482 0.60 +0.2 549,095 + DVU0482 0.62 +0.3 549,128 + DVU0482 0.64 +0.9 549,128 + DVU0482 0.64 -0.0 549,136 - DVU0482 0.65 +0.2 549,166 + DVU0482 0.67 +0.3 549,174 + DVU0482 0.68 +1.5 549,242 + DVU0482 0.72 -0.2 549,250 - DVU0482 0.73 +0.5 549,250 - DVU0482 0.73 +0.3 549,300 - DVU0482 0.76 -1.6 549,486 - DVU0482 0.89 -0.1 549,486 - DVU0482 0.89 -2.1 549,702 - -0.1 549,719 + -0.1 549,764 + +0.1 549,793 + -0.1 549,796 - +0.1 549,808 - -1.0 549,932 + +0.3 549,939 + +0.8 549,975 - +0.2 549,999 - -0.0 549,999 - -2.5 550,064 + +0.4 550,076 - -0.2 550,091 + -0.2 550,129 - -0.0 550,178 - DVU0483 0.11 -0.9 550,183 - DVU0483 0.11 -0.5 550,220 + DVU0483 0.12 -0.1 550,226 - DVU0483 0.13 -0.2 550,235 + DVU0483 0.13 +0.1 550,243 - DVU0483 0.13 +0.3 550,274 - DVU0483 0.15 -0.9 550,400 - DVU0483 0.20 -0.3 550,512 - DVU0483 0.25 +0.2 550,561 + DVU0483 0.28 -0.3 550,589 - DVU0483 0.29 +0.6 550,616 + DVU0483 0.30 -0.6 550,639 - DVU0483 0.31 -0.0 550,639 - DVU0483 0.31 -0.1
Or see this region's nucleotide sequence