Experiment: Lactate-Thiosulfate (15mM) minimal (MOLThioS4)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU1563 and DORF35977 are separated by 220 nucleotides DORF35977 and tRNA-Arg are separated by 114 nucleotides tRNA-Arg and tRNA-Arg are separated by 19 nucleotides tRNA-Arg and tRNA-Arg are separated by 32 nucleotides tRNA-Arg and DORF11999 are separated by 47 nucleotides DORF11999 and cysD are separated by 76 nucleotides
DVU1563: DVU1563 - sensory box histidine kinase/response regulator (TIGR), at 1,644,419 to 1,647,538
DVU1563
DORF35977: DORF35977 - no description, at 1,647,759 to 1,648,106
DORF35977
DVU_tRNA-Arg-1: tRNA-Arg - tRNA with anticodon ACG for Arg (VIMSS-AUTO), at 1,648,221 to 1,648,297
tRNA-Arg
DVU_tRNA-Arg-2: tRNA-Arg - tRNA with anticodon ACG for Arg (VIMSS-AUTO), at 1,648,317 to 1,648,393
tRNA-Arg
DVU_tRNA-Arg-3: tRNA-Arg - tRNA with anticodon ACG for Arg (VIMSS-AUTO), at 1,648,426 to 1,648,502
tRNA-Arg
DORF11999: DORF11999 - SEED: FIG00606676: hypothetical protein, at 1,648,550 to 1,648,987
DORF11999
DVU1566: cysD - phosphoadenosine phosphosulfate reductase, putative (TIGR), at 1,649,064 to 1,649,738
cysD
Position (kb) 1648
1649 Strain fitness (log2 ratio) -1
0
1 at 1647.243 kb on - strand at 1647.326 kb on - strand at 1647.326 kb on - strand at 1647.326 kb on - strand at 1647.326 kb on - strand at 1647.575 kb on - strand at 1647.909 kb on + strand, within DORF35977 at 1647.917 kb on - strand, within DORF35977 at 1647.981 kb on - strand, within DORF35977 at 1648.038 kb on - strand, within DORF35977 at 1648.258 kb on - strand, within tRNA-Arg at 1648.258 kb on - strand, within tRNA-Arg at 1648.758 kb on - strand, within DORF11999 at 1648.853 kb on - strand, within DORF11999 at 1648.853 kb on - strand, within DORF11999 at 1648.855 kb on + strand, within DORF11999 at 1648.871 kb on + strand, within DORF11999 at 1648.893 kb on + strand, within DORF11999 at 1649.111 kb on - strand at 1649.150 kb on + strand, within cysD at 1649.196 kb on - strand, within cysD at 1649.196 kb on - strand, within cysD
Per-strain Table
Position Strand Gene LocusTag Fraction Lactate-Thiosulfate (15mM) minimal (MOLThioS4) remove 1,647,243 - +0.4 1,647,326 - -1.2 1,647,326 - -0.9 1,647,326 - -0.4 1,647,326 - -0.1 1,647,575 - -0.3 1,647,909 + DORF35977 0.43 +0.5 1,647,917 - DORF35977 0.45 +0.0 1,647,981 - DORF35977 0.64 +0.1 1,648,038 - DORF35977 0.80 -0.2 1,648,258 - tRNA-Arg DVU_tRNA-Arg-1 0.48 -1.1 1,648,258 - tRNA-Arg DVU_tRNA-Arg-1 0.48 +0.1 1,648,758 - DORF11999 0.47 -0.8 1,648,853 - DORF11999 0.69 +0.2 1,648,853 - DORF11999 0.69 +0.4 1,648,855 + DORF11999 0.70 -0.3 1,648,871 + DORF11999 0.73 -0.5 1,648,893 + DORF11999 0.78 -0.5 1,649,111 - -0.0 1,649,150 + cysD DVU1566 0.13 -1.3 1,649,196 - cysD DVU1566 0.20 -0.3 1,649,196 - cysD DVU1566 0.20 -1.0
Or see this region's nucleotide sequence