Experiment: Lactate-Thiosulfate (15mM) minimal (MOLThioS4)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU0183 and DVU0184 are separated by 128 nucleotides DVU0184 and DVU0185 are separated by 25 nucleotides DVU0185 and DVU0186 are separated by 105 nucleotides DVU0186 and DVU0187 are separated by 421 nucleotides
DVU0183: DVU0183 - methyl-accepting chemotaxis protein (TIGR), at 227,507 to 229,276
DVU0183
DVU0184: DVU0184 - hypothetical protein (TIGR), at 229,405 to 229,824
DVU0184
DVU0185: DVU0185 - hypothetical protein (TIGR), at 229,850 to 229,915
DVU0185
DVU0186: DVU0186 - conserved hypothetical protein (TIGR), at 230,021 to 230,800
DVU0186
DVU0187: DVU0187 - GGDEF domain protein (TIGR), at 231,222 to 232,313
DVU0187
Position (kb) 230
231 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 229.021 kb on + strand, within DVU0183 at 229.025 kb on + strand, within DVU0183 at 229.072 kb on + strand, within DVU0183 at 229.097 kb on + strand, within DVU0183 at 229.135 kb on + strand at 229.217 kb on + strand at 229.217 kb on + strand at 229.222 kb on + strand at 229.274 kb on - strand at 229.296 kb on + strand at 229.299 kb on - strand at 229.304 kb on - strand at 229.318 kb on + strand at 229.473 kb on + strand, within DVU0184 at 229.481 kb on - strand, within DVU0184 at 229.481 kb on - strand, within DVU0184 at 229.542 kb on - strand, within DVU0184 at 229.587 kb on + strand, within DVU0184 at 229.595 kb on - strand, within DVU0184 at 229.595 kb on - strand, within DVU0184 at 229.597 kb on + strand, within DVU0184 at 229.619 kb on + strand, within DVU0184 at 229.619 kb on + strand, within DVU0184 at 229.643 kb on + strand, within DVU0184 at 229.651 kb on - strand, within DVU0184 at 229.737 kb on - strand, within DVU0184 at 229.963 kb on - strand at 229.981 kb on - strand at 229.991 kb on - strand at 230.077 kb on + strand at 230.085 kb on + strand at 230.098 kb on + strand at 230.164 kb on - strand, within DVU0186 at 230.172 kb on - strand, within DVU0186 at 230.228 kb on + strand, within DVU0186 at 230.229 kb on + strand, within DVU0186 at 230.234 kb on - strand, within DVU0186 at 230.317 kb on - strand, within DVU0186 at 230.330 kb on - strand, within DVU0186 at 230.479 kb on + strand, within DVU0186 at 230.620 kb on + strand, within DVU0186 at 230.748 kb on + strand at 230.824 kb on + strand at 230.832 kb on - strand at 230.963 kb on + strand at 230.963 kb on + strand at 230.963 kb on + strand at 230.971 kb on - strand at 230.971 kb on - strand at 230.971 kb on - strand at 231.004 kb on + strand at 231.004 kb on + strand at 231.004 kb on + strand at 231.040 kb on + strand at 231.263 kb on + strand at 231.304 kb on - strand at 231.320 kb on + strand at 231.322 kb on + strand at 231.323 kb on - strand at 231.340 kb on + strand, within DVU0187 at 231.348 kb on - strand, within DVU0187 at 231.352 kb on + strand, within DVU0187 at 231.352 kb on + strand, within DVU0187 at 231.352 kb on + strand, within DVU0187 at 231.352 kb on + strand, within DVU0187 at 231.352 kb on + strand, within DVU0187 at 231.352 kb on + strand, within DVU0187 at 231.360 kb on - strand, within DVU0187 at 231.360 kb on - strand, within DVU0187 at 231.360 kb on - strand, within DVU0187 at 231.360 kb on - strand, within DVU0187 at 231.360 kb on - strand, within DVU0187 at 231.360 kb on - strand, within DVU0187 at 231.360 kb on - strand, within DVU0187 at 231.382 kb on + strand, within DVU0187 at 231.431 kb on - strand, within DVU0187 at 231.504 kb on + strand, within DVU0187 at 231.598 kb on - strand, within DVU0187 at 231.598 kb on - strand, within DVU0187 at 231.598 kb on - strand, within DVU0187 at 231.663 kb on - strand, within DVU0187 at 231.694 kb on - strand, within DVU0187 at 231.751 kb on - strand, within DVU0187 at 231.786 kb on - strand, within DVU0187
Per-strain Table
Position Strand Gene LocusTag Fraction Lactate-Thiosulfate (15mM) minimal (MOLThioS4) remove 229,021 + DVU0183 0.86 -0.9 229,025 + DVU0183 0.86 -0.8 229,072 + DVU0183 0.88 -0.9 229,097 + DVU0183 0.90 -1.1 229,135 + -2.3 229,217 + -1.6 229,217 + +1.5 229,222 + +0.1 229,274 - +0.3 229,296 + +0.3 229,299 - -0.2 229,304 - -0.3 229,318 + +1.4 229,473 + DVU0184 0.16 -0.0 229,481 - DVU0184 0.18 +0.4 229,481 - DVU0184 0.18 -0.8 229,542 - DVU0184 0.33 -0.6 229,587 + DVU0184 0.43 -1.2 229,595 - DVU0184 0.45 -0.2 229,595 - DVU0184 0.45 +0.4 229,597 + DVU0184 0.46 -0.7 229,619 + DVU0184 0.51 +0.4 229,619 + DVU0184 0.51 -0.9 229,643 + DVU0184 0.57 +0.0 229,651 - DVU0184 0.59 -1.4 229,737 - DVU0184 0.79 -3.2 229,963 - +0.7 229,981 - +0.8 229,991 - -3.4 230,077 + -2.5 230,085 + -1.5 230,098 + -3.2 230,164 - DVU0186 0.18 -2.1 230,172 - DVU0186 0.19 -0.5 230,228 + DVU0186 0.27 -0.9 230,229 + DVU0186 0.27 -3.4 230,234 - DVU0186 0.27 -2.3 230,317 - DVU0186 0.38 -2.5 230,330 - DVU0186 0.40 -2.0 230,479 + DVU0186 0.59 -2.1 230,620 + DVU0186 0.77 -2.8 230,748 + -2.6 230,824 + -1.8 230,832 - -2.6 230,963 + -1.8 230,963 + -1.4 230,963 + -1.1 230,971 - +0.2 230,971 - +0.7 230,971 - -1.2 231,004 + +0.5 231,004 + -0.0 231,004 + -0.4 231,040 + -0.1 231,263 + -0.7 231,304 - -0.7 231,320 + -0.6 231,322 + -1.1 231,323 - +1.1 231,340 + DVU0187 0.11 +0.1 231,348 - DVU0187 0.12 -1.2 231,352 + DVU0187 0.12 -0.0 231,352 + DVU0187 0.12 -0.7 231,352 + DVU0187 0.12 -1.2 231,352 + DVU0187 0.12 +0.3 231,352 + DVU0187 0.12 +0.5 231,352 + DVU0187 0.12 -0.8 231,360 - DVU0187 0.13 -1.1 231,360 - DVU0187 0.13 +0.4 231,360 - DVU0187 0.13 -0.3 231,360 - DVU0187 0.13 +0.4 231,360 - DVU0187 0.13 -0.9 231,360 - DVU0187 0.13 -2.0 231,360 - DVU0187 0.13 -1.2 231,382 + DVU0187 0.15 -0.7 231,431 - DVU0187 0.19 -0.4 231,504 + DVU0187 0.26 +0.0 231,598 - DVU0187 0.34 +0.1 231,598 - DVU0187 0.34 -1.2 231,598 - DVU0187 0.34 -0.0 231,663 - DVU0187 0.40 +0.3 231,694 - DVU0187 0.43 -0.5 231,751 - DVU0187 0.48 -1.1 231,786 - DVU0187 0.52 +1.4
Or see this region's nucleotide sequence