Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1607

Experiment: Lactate-Thiosulfate (15mM) minimal (MOLThioS4)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU1606 and DVU1607 are separated by 0 nucleotidesDVU1607 and ligA are separated by 53 nucleotides DVU1606: DVU1606 - potassium uptake protein, TrkA family (TIGR), at 1,688,825 to 1,689,877 DVU1606 DVU1607: DVU1607 - hypothetical protein (TIGR), at 1,689,878 to 1,690,624 DVU1607 DVU1608: ligA - DNA ligase, NAD-dependent (TIGR), at 1,690,678 to 1,693,077 ligA Position (kb) 1689 1690 1691Strain fitness (log2 ratio) -1 0 1 2at 1689.027 kb on + strand, within DVU1606at 1689.083 kb on - strand, within DVU1606at 1689.135 kb on - strand, within DVU1606at 1689.160 kb on - strand, within DVU1606at 1689.181 kb on + strand, within DVU1606at 1689.195 kb on - strand, within DVU1606at 1689.240 kb on + strand, within DVU1606at 1689.324 kb on + strand, within DVU1606at 1689.382 kb on + strand, within DVU1606at 1689.464 kb on - strand, within DVU1606at 1689.687 kb on + strand, within DVU1606at 1689.692 kb on - strand, within DVU1606at 1689.731 kb on + strand, within DVU1606at 1689.733 kb on + strand, within DVU1606at 1689.913 kb on + strandat 1689.913 kb on + strandat 1689.916 kb on + strandat 1689.916 kb on - strandat 1689.916 kb on - strandat 1689.921 kb on - strandat 1689.944 kb on - strandat 1690.031 kb on - strand, within DVU1607at 1690.036 kb on + strand, within DVU1607at 1690.044 kb on - strand, within DVU1607at 1690.057 kb on + strand, within DVU1607at 1690.057 kb on + strand, within DVU1607at 1690.106 kb on + strand, within DVU1607at 1690.220 kb on - strand, within DVU1607at 1690.235 kb on - strand, within DVU1607at 1690.244 kb on - strand, within DVU1607at 1690.251 kb on + strand, within DVU1607at 1690.251 kb on + strand, within DVU1607at 1690.259 kb on - strand, within DVU1607at 1690.327 kb on + strand, within DVU1607at 1690.382 kb on + strand, within DVU1607at 1690.437 kb on + strand, within DVU1607at 1690.717 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Lactate-Thiosulfate (15mM) minimal (MOLThioS4)
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1,689,027 + DVU1606 0.19 -0.1
1,689,083 - DVU1606 0.25 -0.1
1,689,135 - DVU1606 0.29 +0.2
1,689,160 - DVU1606 0.32 -0.7
1,689,181 + DVU1606 0.34 +0.2
1,689,195 - DVU1606 0.35 -0.4
1,689,240 + DVU1606 0.39 -0.6
1,689,324 + DVU1606 0.47 -0.3
1,689,382 + DVU1606 0.53 +0.2
1,689,464 - DVU1606 0.61 +0.6
1,689,687 + DVU1606 0.82 -0.0
1,689,692 - DVU1606 0.82 -0.8
1,689,731 + DVU1606 0.86 -0.2
1,689,733 + DVU1606 0.86 -1.1
1,689,913 + -1.4
1,689,913 + -1.7
1,689,916 + +1.0
1,689,916 - -0.3
1,689,916 - -0.6
1,689,921 - +0.0
1,689,944 - +0.4
1,690,031 - DVU1607 0.20 -0.1
1,690,036 + DVU1607 0.21 -1.1
1,690,044 - DVU1607 0.22 +0.9
1,690,057 + DVU1607 0.24 -0.8
1,690,057 + DVU1607 0.24 +2.1
1,690,106 + DVU1607 0.31 -0.0
1,690,220 - DVU1607 0.46 -0.6
1,690,235 - DVU1607 0.48 -0.0
1,690,244 - DVU1607 0.49 -0.6
1,690,251 + DVU1607 0.50 -1.2
1,690,251 + DVU1607 0.50 -0.1
1,690,259 - DVU1607 0.51 +0.1
1,690,327 + DVU1607 0.60 +0.0
1,690,382 + DVU1607 0.67 +0.3
1,690,437 + DVU1607 0.75 +0.3
1,690,717 + +0.3

Or see this region's nucleotide sequence