Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU0294

Experiment: Lactate-Thiosulfate (15mM) minimal (MOLThioS4)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU0293 and DVU0294 are separated by 388 nucleotidesDVU0294 and DVU0295 are separated by 156 nucleotides DVU0293: DVU0293 - prokaryotic dksA/traR C4-type zinc finger family protein (TIGR), at 337,767 to 338,108 DVU0293 DVU0294: DVU0294 - glycosyl transferase, group 2 family protein (TIGR), at 338,497 to 340,326 DVU0294 DVU0295: DVU0295 - amine oxidase, flavin-containing (TIGR), at 340,483 to 341,832 DVU0295 Position (kb) 338 339 340 341Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 337.517 kb on + strandat 337.524 kb on + strandat 337.525 kb on - strandat 337.771 kb on + strandat 337.784 kb on - strandat 337.796 kb on + strandat 337.885 kb on + strand, within DVU0293at 337.949 kb on - strand, within DVU0293at 338.026 kb on + strand, within DVU0293at 338.071 kb on + strand, within DVU0293at 338.186 kb on + strandat 338.194 kb on - strandat 338.276 kb on + strandat 338.420 kb on - strandat 338.461 kb on + strandat 338.474 kb on - strandat 338.474 kb on - strandat 338.474 kb on - strandat 338.476 kb on - strandat 338.491 kb on + strandat 338.499 kb on - strandat 338.509 kb on - strandat 338.530 kb on - strandat 338.536 kb on - strandat 338.557 kb on + strandat 338.565 kb on - strandat 338.565 kb on - strandat 338.565 kb on - strandat 338.565 kb on - strandat 338.566 kb on + strandat 338.614 kb on - strandat 338.664 kb on + strandat 338.668 kb on + strandat 338.677 kb on - strandat 338.823 kb on + strand, within DVU0294at 338.877 kb on - strand, within DVU0294at 338.976 kb on + strand, within DVU0294at 338.992 kb on - strand, within DVU0294at 339.055 kb on - strand, within DVU0294at 339.055 kb on - strand, within DVU0294at 339.079 kb on + strand, within DVU0294at 339.131 kb on + strand, within DVU0294at 339.149 kb on - strand, within DVU0294at 339.149 kb on - strand, within DVU0294at 339.160 kb on - strand, within DVU0294at 339.198 kb on + strand, within DVU0294at 339.206 kb on - strand, within DVU0294at 339.223 kb on - strand, within DVU0294at 339.225 kb on + strand, within DVU0294at 339.234 kb on - strand, within DVU0294at 339.313 kb on - strand, within DVU0294at 339.334 kb on - strand, within DVU0294at 339.334 kb on - strand, within DVU0294at 339.337 kb on + strand, within DVU0294at 339.348 kb on + strand, within DVU0294at 339.422 kb on + strand, within DVU0294at 339.490 kb on - strand, within DVU0294at 339.500 kb on - strand, within DVU0294at 339.576 kb on + strand, within DVU0294at 339.729 kb on - strand, within DVU0294at 339.729 kb on - strand, within DVU0294at 339.747 kb on + strand, within DVU0294at 339.762 kb on + strand, within DVU0294at 339.766 kb on - strand, within DVU0294at 339.775 kb on + strand, within DVU0294at 339.794 kb on + strand, within DVU0294at 339.802 kb on - strand, within DVU0294at 339.802 kb on - strand, within DVU0294at 339.802 kb on - strand, within DVU0294at 339.828 kb on + strand, within DVU0294at 339.836 kb on - strand, within DVU0294at 339.836 kb on - strand, within DVU0294at 339.846 kb on - strand, within DVU0294at 339.852 kb on + strand, within DVU0294at 339.944 kb on + strand, within DVU0294at 340.035 kb on + strand, within DVU0294at 340.189 kb on - strandat 340.242 kb on + strandat 340.314 kb on - strandat 340.320 kb on + strandat 340.320 kb on + strandat 340.320 kb on + strandat 340.370 kb on - strandat 340.395 kb on + strandat 340.397 kb on + strandat 340.448 kb on - strandat 340.486 kb on - strandat 340.521 kb on - strandat 340.664 kb on - strand, within DVU0295at 340.767 kb on + strand, within DVU0295at 340.775 kb on - strand, within DVU0295at 340.821 kb on - strand, within DVU0295at 340.823 kb on + strand, within DVU0295at 340.865 kb on + strand, within DVU0295at 340.891 kb on - strand, within DVU0295at 340.994 kb on + strand, within DVU0295at 340.996 kb on - strand, within DVU0295at 341.067 kb on + strand, within DVU0295at 341.074 kb on + strand, within DVU0295at 341.132 kb on + strand, within DVU0295at 341.156 kb on + strand, within DVU0295at 341.161 kb on + strand, within DVU0295at 341.164 kb on - strand, within DVU0295at 341.184 kb on + strand, within DVU0295at 341.192 kb on - strand, within DVU0295at 341.192 kb on - strand, within DVU0295at 341.223 kb on - strand, within DVU0295at 341.228 kb on + strand, within DVU0295at 341.236 kb on - strand, within DVU0295at 341.236 kb on - strand, within DVU0295at 341.240 kb on + strand, within DVU0295at 341.248 kb on - strand, within DVU0295at 341.282 kb on - strand, within DVU0295

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Per-strain Table

Position Strand Gene LocusTag Fraction Lactate-Thiosulfate (15mM) minimal (MOLThioS4)
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337,517 + -1.2
337,524 + -0.8
337,525 - -1.8
337,771 + -0.2
337,784 - -0.7
337,796 + +0.5
337,885 + DVU0293 0.35 +0.5
337,949 - DVU0293 0.53 -0.4
338,026 + DVU0293 0.76 +0.1
338,071 + DVU0293 0.89 -0.7
338,186 + -0.4
338,194 - -0.4
338,276 + -0.0
338,420 - +2.1
338,461 + +0.3
338,474 - -0.1
338,474 - -0.9
338,474 - +0.5
338,476 - -1.2
338,491 + +0.2
338,499 - -1.6
338,509 - -1.8
338,530 - +0.7
338,536 - -0.6
338,557 + -0.1
338,565 - +0.1
338,565 - -0.3
338,565 - -0.6
338,565 - -1.4
338,566 + -0.5
338,614 - -0.4
338,664 + -0.4
338,668 + -0.3
338,677 - +0.2
338,823 + DVU0294 0.18 -0.6
338,877 - DVU0294 0.21 -2.3
338,976 + DVU0294 0.26 -0.7
338,992 - DVU0294 0.27 +0.1
339,055 - DVU0294 0.30 -0.5
339,055 - DVU0294 0.30 -0.3
339,079 + DVU0294 0.32 +0.6
339,131 + DVU0294 0.35 -0.6
339,149 - DVU0294 0.36 +0.2
339,149 - DVU0294 0.36 -2.0
339,160 - DVU0294 0.36 -0.9
339,198 + DVU0294 0.38 -1.2
339,206 - DVU0294 0.39 -0.0
339,223 - DVU0294 0.40 -1.5
339,225 + DVU0294 0.40 -0.5
339,234 - DVU0294 0.40 -1.8
339,313 - DVU0294 0.45 -0.2
339,334 - DVU0294 0.46 -0.8
339,334 - DVU0294 0.46 -1.0
339,337 + DVU0294 0.46 -0.0
339,348 + DVU0294 0.47 -0.2
339,422 + DVU0294 0.51 -3.0
339,490 - DVU0294 0.54 -1.0
339,500 - DVU0294 0.55 -1.0
339,576 + DVU0294 0.59 +1.2
339,729 - DVU0294 0.67 +0.4
339,729 - DVU0294 0.67 -0.7
339,747 + DVU0294 0.68 -0.2
339,762 + DVU0294 0.69 -2.7
339,766 - DVU0294 0.69 -0.8
339,775 + DVU0294 0.70 +0.1
339,794 + DVU0294 0.71 +0.3
339,802 - DVU0294 0.71 +0.2
339,802 - DVU0294 0.71 +0.2
339,802 - DVU0294 0.71 -0.0
339,828 + DVU0294 0.73 -1.2
339,836 - DVU0294 0.73 -0.2
339,836 - DVU0294 0.73 -1.4
339,846 - DVU0294 0.74 +0.9
339,852 + DVU0294 0.74 -0.5
339,944 + DVU0294 0.79 -0.6
340,035 + DVU0294 0.84 -0.8
340,189 - -0.3
340,242 + -0.1
340,314 - +0.1
340,320 + -1.8
340,320 + -0.9
340,320 + +0.3
340,370 - -0.5
340,395 + -0.8
340,397 + +0.1
340,448 - -0.5
340,486 - +0.7
340,521 - +0.9
340,664 - DVU0295 0.13 +1.0
340,767 + DVU0295 0.21 +1.0
340,775 - DVU0295 0.22 +0.9
340,821 - DVU0295 0.25 -0.3
340,823 + DVU0295 0.25 +0.9
340,865 + DVU0295 0.28 +0.9
340,891 - DVU0295 0.30 +1.3
340,994 + DVU0295 0.38 -1.0
340,996 - DVU0295 0.38 +0.6
341,067 + DVU0295 0.43 -0.8
341,074 + DVU0295 0.44 +1.1
341,132 + DVU0295 0.48 +0.6
341,156 + DVU0295 0.50 -0.0
341,161 + DVU0295 0.50 +0.3
341,164 - DVU0295 0.50 +0.4
341,184 + DVU0295 0.52 +1.0
341,192 - DVU0295 0.53 +0.4
341,192 - DVU0295 0.53 +0.4
341,223 - DVU0295 0.55 +0.4
341,228 + DVU0295 0.55 +1.3
341,236 - DVU0295 0.56 +0.3
341,236 - DVU0295 0.56 +1.3
341,240 + DVU0295 0.56 +0.6
341,248 - DVU0295 0.57 +0.1
341,282 - DVU0295 0.59 +0.6

Or see this region's nucleotide sequence