Experiment: Lactate-Thiosulfate (15mM) minimal (MOLThioS4)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVUA0121 and yscR overlap by 4 nucleotides yscR and DVUA0123 are separated by 30 nucleotides DVUA0123 and DVUA0124 are separated by 15 nucleotides DVUA0124 and slt are separated by 10 nucleotides
DVUA0121: DVUA0121 - type III secretion system protein, YopQ family (TIGR), at 160,160 to 161,614
DVUA0121
DVUA0122: yscR - type III secretion system protein, YscR family (TIGR), at 161,611 to 162,261
yscR
DVUA0123: DVUA0123 - anti-anti-sigma factor (TIGR), at 162,292 to 162,627
DVUA0123
DVUA0124: DVUA0124 - sigma factor serine-protein kinase (TIGR), at 162,643 to 163,059
DVUA0124
DVUA0125: slt - transglycosylase, SLT family (TIGR), at 163,070 to 164,422
slt
Position (kb) 161
162
163 Strain fitness (log2 ratio) -2
-1
0
1 at 160.623 kb on - strand, within DVUA0121 at 160.690 kb on + strand, within DVUA0121 at 160.840 kb on - strand, within DVUA0121 at 160.900 kb on - strand, within DVUA0121 at 160.926 kb on - strand, within DVUA0121 at 160.957 kb on + strand, within DVUA0121 at 161.053 kb on + strand, within DVUA0121 at 161.073 kb on - strand, within DVUA0121 at 161.099 kb on + strand, within DVUA0121 at 161.163 kb on + strand, within DVUA0121 at 161.297 kb on + strand, within DVUA0121 at 161.454 kb on - strand, within DVUA0121 at 161.485 kb on + strand at 161.485 kb on + strand at 161.511 kb on + strand at 161.525 kb on + strand at 161.533 kb on - strand at 161.603 kb on - strand at 161.625 kb on - strand at 161.643 kb on + strand at 161.655 kb on + strand at 161.660 kb on + strand at 161.678 kb on - strand, within yscR at 161.697 kb on + strand, within yscR at 161.718 kb on - strand, within yscR at 161.783 kb on + strand, within yscR at 161.828 kb on + strand, within yscR at 161.858 kb on + strand, within yscR at 161.877 kb on - strand, within yscR at 161.898 kb on - strand, within yscR at 161.909 kb on - strand, within yscR at 161.959 kb on + strand, within yscR at 161.980 kb on - strand, within yscR at 162.011 kb on - strand, within yscR at 162.093 kb on + strand, within yscR at 162.094 kb on + strand, within yscR at 162.116 kb on + strand, within yscR at 162.174 kb on - strand, within yscR at 162.243 kb on + strand at 162.251 kb on - strand at 162.280 kb on + strand at 162.380 kb on + strand, within DVUA0123 at 162.402 kb on - strand, within DVUA0123 at 162.450 kb on - strand, within DVUA0123 at 162.491 kb on - strand, within DVUA0123 at 162.543 kb on + strand, within DVUA0123 at 163.210 kb on - strand, within slt at 163.216 kb on + strand, within slt at 163.235 kb on - strand, within slt
Per-strain Table
Position Strand Gene LocusTag Fraction Lactate-Thiosulfate (15mM) minimal (MOLThioS4) remove 160,623 - DVUA0121 0.32 +0.7 160,690 + DVUA0121 0.36 +0.5 160,840 - DVUA0121 0.47 -2.0 160,900 - DVUA0121 0.51 -0.2 160,926 - DVUA0121 0.53 +1.7 160,957 + DVUA0121 0.55 -1.9 161,053 + DVUA0121 0.61 +1.3 161,073 - DVUA0121 0.63 +0.6 161,099 + DVUA0121 0.65 -0.0 161,163 + DVUA0121 0.69 +0.4 161,297 + DVUA0121 0.78 +1.6 161,454 - DVUA0121 0.89 +0.8 161,485 + +0.3 161,485 + +0.1 161,511 + +1.5 161,525 + -0.4 161,533 - +0.8 161,603 - -0.0 161,625 - -0.5 161,643 + -1.7 161,655 + -0.3 161,660 + -0.5 161,678 - yscR DVUA0122 0.10 -0.0 161,697 + yscR DVUA0122 0.13 -2.2 161,718 - yscR DVUA0122 0.16 -1.1 161,783 + yscR DVUA0122 0.26 +0.2 161,828 + yscR DVUA0122 0.33 -1.1 161,858 + yscR DVUA0122 0.38 -0.9 161,877 - yscR DVUA0122 0.41 -1.2 161,898 - yscR DVUA0122 0.44 +0.1 161,909 - yscR DVUA0122 0.46 -0.7 161,959 + yscR DVUA0122 0.53 -0.9 161,980 - yscR DVUA0122 0.57 -0.1 162,011 - yscR DVUA0122 0.61 -0.4 162,093 + yscR DVUA0122 0.74 -1.4 162,094 + yscR DVUA0122 0.74 +0.0 162,116 + yscR DVUA0122 0.78 -0.7 162,174 - yscR DVUA0122 0.86 -1.1 162,243 + +0.1 162,251 - -0.1 162,280 + -0.6 162,380 + DVUA0123 0.26 -0.6 162,402 - DVUA0123 0.33 -0.4 162,450 - DVUA0123 0.47 -1.6 162,491 - DVUA0123 0.59 -1.6 162,543 + DVUA0123 0.75 -0.4 163,210 - slt DVUA0125 0.10 +0.1 163,216 + slt DVUA0125 0.11 -0.2 163,235 - slt DVUA0125 0.12 +0.1
Or see this region's nucleotide sequence