Experiment: Lactate-Thiosulfate (15mM) minimal (MOLThioS4)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU0245 and DVU0246 are separated by 178 nucleotides DVU0246 and ntrX are separated by 362 nucleotides ntrX and DVU0248 are separated by 9 nucleotides
DVU0245: DVU0245 - protein phosphatase, putative (TIGR), at 277,059 to 278,168
DVU0245
DVU0246: DVU0246 - pyruvate phosphate dikinase, PEP/pyruvate binding domain protein (TIGR), at 278,347 to 280,581
DVU0246
DVU0247: ntrX - response regulator (TIGR), at 280,944 to 281,303
ntrX
DVU0248: DVU0248 - sensory box histidine kinase, authentic point mutation (TIGR), at 281,313 to 283,421
DVU0248
Position (kb) 278
279
280
281 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 277.378 kb on - strand, within DVU0245 at 277.387 kb on + strand, within DVU0245 at 277.406 kb on + strand, within DVU0245 at 277.464 kb on - strand, within DVU0245 at 277.464 kb on - strand, within DVU0245 at 277.503 kb on + strand, within DVU0245 at 277.513 kb on - strand, within DVU0245 at 277.762 kb on + strand, within DVU0245 at 277.793 kb on + strand, within DVU0245 at 277.821 kb on + strand, within DVU0245 at 277.848 kb on + strand, within DVU0245 at 277.856 kb on - strand, within DVU0245 at 277.888 kb on - strand, within DVU0245 at 277.948 kb on + strand, within DVU0245 at 277.999 kb on - strand, within DVU0245 at 278.002 kb on + strand, within DVU0245 at 278.105 kb on + strand at 278.108 kb on - strand at 278.140 kb on + strand at 278.148 kb on - strand at 278.148 kb on - strand at 278.171 kb on - strand at 278.171 kb on - strand at 278.171 kb on - strand at 278.179 kb on - strand at 278.179 kb on - strand at 278.249 kb on + strand at 278.252 kb on + strand at 278.269 kb on + strand at 278.302 kb on + strand at 278.326 kb on + strand at 278.363 kb on + strand at 278.363 kb on + strand at 278.371 kb on - strand at 278.380 kb on - strand at 278.464 kb on - strand at 278.528 kb on + strand at 278.528 kb on + strand at 278.528 kb on + strand at 278.536 kb on - strand at 278.536 kb on - strand at 278.536 kb on - strand at 278.589 kb on + strand, within DVU0246 at 278.634 kb on + strand, within DVU0246 at 278.642 kb on - strand, within DVU0246 at 278.653 kb on - strand, within DVU0246 at 278.668 kb on - strand, within DVU0246 at 278.762 kb on + strand, within DVU0246 at 278.871 kb on + strand, within DVU0246 at 278.871 kb on + strand, within DVU0246 at 278.934 kb on - strand, within DVU0246 at 278.983 kb on - strand, within DVU0246 at 279.025 kb on + strand, within DVU0246 at 279.031 kb on - strand, within DVU0246 at 279.037 kb on + strand, within DVU0246 at 279.070 kb on + strand, within DVU0246 at 279.168 kb on + strand, within DVU0246 at 279.174 kb on - strand, within DVU0246 at 279.181 kb on - strand, within DVU0246 at 279.206 kb on + strand, within DVU0246 at 279.219 kb on - strand, within DVU0246 at 279.235 kb on + strand, within DVU0246 at 279.265 kb on + strand, within DVU0246 at 279.292 kb on + strand, within DVU0246 at 279.304 kb on + strand, within DVU0246 at 279.311 kb on + strand, within DVU0246 at 279.442 kb on + strand, within DVU0246 at 279.450 kb on - strand, within DVU0246 at 279.539 kb on - strand, within DVU0246 at 279.558 kb on + strand, within DVU0246 at 279.587 kb on - strand, within DVU0246 at 279.608 kb on + strand, within DVU0246 at 279.616 kb on - strand, within DVU0246 at 279.616 kb on - strand, within DVU0246 at 279.661 kb on + strand, within DVU0246 at 279.690 kb on + strand, within DVU0246 at 279.693 kb on - strand, within DVU0246 at 279.700 kb on + strand, within DVU0246 at 279.720 kb on + strand, within DVU0246 at 279.721 kb on - strand, within DVU0246 at 279.729 kb on - strand, within DVU0246 at 279.862 kb on - strand, within DVU0246 at 279.920 kb on + strand, within DVU0246 at 279.930 kb on - strand, within DVU0246 at 279.973 kb on - strand, within DVU0246 at 279.983 kb on - strand, within DVU0246 at 279.983 kb on - strand, within DVU0246 at 280.015 kb on + strand, within DVU0246 at 280.026 kb on + strand, within DVU0246 at 280.028 kb on + strand, within DVU0246 at 280.040 kb on + strand, within DVU0246 at 280.093 kb on + strand, within DVU0246 at 280.093 kb on + strand, within DVU0246 at 280.116 kb on - strand, within DVU0246 at 280.157 kb on + strand, within DVU0246 at 280.165 kb on - strand, within DVU0246 at 280.167 kb on + strand, within DVU0246 at 280.168 kb on - strand, within DVU0246 at 280.181 kb on + strand, within DVU0246 at 280.201 kb on - strand, within DVU0246 at 280.201 kb on - strand, within DVU0246 at 280.238 kb on + strand, within DVU0246 at 280.245 kb on + strand, within DVU0246 at 280.282 kb on - strand, within DVU0246 at 280.326 kb on - strand, within DVU0246 at 280.341 kb on + strand, within DVU0246 at 280.360 kb on - strand at 280.365 kb on + strand at 280.419 kb on - strand at 280.419 kb on - strand at 280.464 kb on - strand at 280.573 kb on + strand at 280.581 kb on - strand at 280.593 kb on - strand at 280.611 kb on + strand at 280.649 kb on - strand at 280.670 kb on - strand at 280.670 kb on - strand at 280.702 kb on + strand at 280.720 kb on + strand at 280.767 kb on - strand at 280.814 kb on - strand at 280.814 kb on - strand at 280.825 kb on - strand at 280.869 kb on - strand at 280.902 kb on + strand at 280.921 kb on + strand at 280.978 kb on + strand at 280.997 kb on + strand, within ntrX at 281.007 kb on + strand, within ntrX at 281.084 kb on + strand, within ntrX at 281.089 kb on + strand, within ntrX at 281.097 kb on - strand, within ntrX at 281.125 kb on - strand, within ntrX at 281.125 kb on - strand, within ntrX at 281.228 kb on - strand, within ntrX at 281.263 kb on + strand, within ntrX at 281.312 kb on - strand at 281.432 kb on + strand at 281.482 kb on + strand at 281.520 kb on + strand at 281.520 kb on + strand at 281.533 kb on - strand, within DVU0248
Per-strain Table
Position Strand Gene LocusTag Fraction Lactate-Thiosulfate (15mM) minimal (MOLThioS4) remove 277,378 - DVU0245 0.29 -0.4 277,387 + DVU0245 0.30 -0.8 277,406 + DVU0245 0.31 -1.8 277,464 - DVU0245 0.36 -0.0 277,464 - DVU0245 0.36 -1.9 277,503 + DVU0245 0.40 +0.1 277,513 - DVU0245 0.41 -1.7 277,762 + DVU0245 0.63 -0.1 277,793 + DVU0245 0.66 -0.9 277,821 + DVU0245 0.69 -1.4 277,848 + DVU0245 0.71 -0.3 277,856 - DVU0245 0.72 -2.1 277,888 - DVU0245 0.75 +0.2 277,948 + DVU0245 0.80 -1.1 277,999 - DVU0245 0.85 -1.2 278,002 + DVU0245 0.85 -0.2 278,105 + -0.8 278,108 - -0.3 278,140 + -0.8 278,148 - +0.4 278,148 - +1.6 278,171 - -1.3 278,171 - -0.0 278,171 - -0.6 278,179 - -1.8 278,179 - -1.2 278,249 + -0.3 278,252 + -1.0 278,269 + -2.1 278,302 + +0.5 278,326 + -3.0 278,363 + -3.2 278,363 + -0.9 278,371 - -3.3 278,380 - -2.9 278,464 - -2.7 278,528 + -0.1 278,528 + -2.1 278,528 + -1.8 278,536 - -1.3 278,536 - -0.3 278,536 - -1.3 278,589 + DVU0246 0.11 -0.2 278,634 + DVU0246 0.13 +0.9 278,642 - DVU0246 0.13 -0.4 278,653 - DVU0246 0.14 -1.6 278,668 - DVU0246 0.14 -3.3 278,762 + DVU0246 0.19 -2.0 278,871 + DVU0246 0.23 -2.0 278,871 + DVU0246 0.23 -0.3 278,934 - DVU0246 0.26 -2.2 278,983 - DVU0246 0.28 -3.6 279,025 + DVU0246 0.30 -1.0 279,031 - DVU0246 0.31 -3.6 279,037 + DVU0246 0.31 -2.6 279,070 + DVU0246 0.32 -1.2 279,168 + DVU0246 0.37 -2.0 279,174 - DVU0246 0.37 -2.5 279,181 - DVU0246 0.37 +0.1 279,206 + DVU0246 0.38 -0.8 279,219 - DVU0246 0.39 -2.5 279,235 + DVU0246 0.40 -2.9 279,265 + DVU0246 0.41 -0.0 279,292 + DVU0246 0.42 -1.3 279,304 + DVU0246 0.43 -1.7 279,311 + DVU0246 0.43 -1.7 279,442 + DVU0246 0.49 -0.9 279,450 - DVU0246 0.49 -2.7 279,539 - DVU0246 0.53 -1.8 279,558 + DVU0246 0.54 -3.5 279,587 - DVU0246 0.55 -0.6 279,608 + DVU0246 0.56 -3.0 279,616 - DVU0246 0.57 -1.6 279,616 - DVU0246 0.57 -0.1 279,661 + DVU0246 0.59 +0.1 279,690 + DVU0246 0.60 -1.4 279,693 - DVU0246 0.60 -1.9 279,700 + DVU0246 0.61 -1.4 279,720 + DVU0246 0.61 -2.1 279,721 - DVU0246 0.61 -0.7 279,729 - DVU0246 0.62 -1.9 279,862 - DVU0246 0.68 -3.3 279,920 + DVU0246 0.70 -0.3 279,930 - DVU0246 0.71 -1.7 279,973 - DVU0246 0.73 -3.5 279,983 - DVU0246 0.73 +0.2 279,983 - DVU0246 0.73 -2.8 280,015 + DVU0246 0.75 -2.0 280,026 + DVU0246 0.75 -2.8 280,028 + DVU0246 0.75 -2.2 280,040 + DVU0246 0.76 -2.8 280,093 + DVU0246 0.78 -2.8 280,093 + DVU0246 0.78 -3.1 280,116 - DVU0246 0.79 -1.0 280,157 + DVU0246 0.81 -1.2 280,165 - DVU0246 0.81 -1.5 280,167 + DVU0246 0.81 -2.7 280,168 - DVU0246 0.81 -2.9 280,181 + DVU0246 0.82 -0.7 280,201 - DVU0246 0.83 -1.4 280,201 - DVU0246 0.83 -2.0 280,238 + DVU0246 0.85 -1.2 280,245 + DVU0246 0.85 -1.1 280,282 - DVU0246 0.87 -1.4 280,326 - DVU0246 0.89 -1.7 280,341 + DVU0246 0.89 -0.8 280,360 - -1.2 280,365 + -2.4 280,419 - -1.0 280,419 - -0.7 280,464 - -0.8 280,573 + -3.4 280,581 - -1.5 280,593 - -1.7 280,611 + -1.9 280,649 - -2.1 280,670 - -1.3 280,670 - -0.9 280,702 + -2.8 280,720 + -1.8 280,767 - -1.3 280,814 - -1.5 280,814 - +0.6 280,825 - -2.2 280,869 - -1.4 280,902 + +0.4 280,921 + -3.0 280,978 + -1.7 280,997 + ntrX DVU0247 0.15 -3.0 281,007 + ntrX DVU0247 0.17 -2.4 281,084 + ntrX DVU0247 0.39 -0.6 281,089 + ntrX DVU0247 0.40 -1.8 281,097 - ntrX DVU0247 0.42 -2.9 281,125 - ntrX DVU0247 0.50 -1.1 281,125 - ntrX DVU0247 0.50 -1.8 281,228 - ntrX DVU0247 0.79 -1.4 281,263 + ntrX DVU0247 0.89 -2.3 281,312 - +0.1 281,432 + -1.7 281,482 + -2.5 281,520 + -1.5 281,520 + -4.2 281,533 - DVU0248 0.10 -2.0
Or see this region's nucleotide sequence