Experiment: Lactate-Thiosulfate (15mM) minimal (MOLThioS4)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU0236 and tRNA-Lys are separated by 106 nucleotides tRNA-Lys and serS are separated by 58 nucleotides serS and DVU0238 are separated by 104 nucleotides
DVU0236: DVU0236 - site-specific recombinase, phage integrase family (TIGR), at 269,283 to 270,425
DVU0236
DVU_tRNA-Lys-1: tRNA-Lys - tRNA with anticodon TTT for Lys (VIMSS-AUTO), at 270,532 to 270,607
tRNA-Lys
DVU0237: serS - seryl-tRNA synthetase (TIGR), at 270,666 to 271,940
serS
DVU0238: DVU0238 - hypothetical protein (TIGR), at 272,045 to 272,434
DVU0238
Position (kb) 270
271
272 Strain fitness (log2 ratio) -2
-1
0
1
2 at 269.708 kb on + strand, within DVU0236 at 269.709 kb on + strand, within DVU0236 at 269.709 kb on + strand, within DVU0236 at 269.709 kb on + strand, within DVU0236 at 269.709 kb on + strand, within DVU0236 at 269.709 kb on - strand, within DVU0236 at 269.710 kb on - strand, within DVU0236 at 269.717 kb on - strand, within DVU0236 at 269.717 kb on - strand, within DVU0236 at 269.731 kb on - strand, within DVU0236 at 269.742 kb on + strand, within DVU0236 at 269.750 kb on - strand, within DVU0236 at 269.792 kb on - strand, within DVU0236 at 269.794 kb on - strand, within DVU0236 at 269.796 kb on + strand, within DVU0236 at 269.826 kb on - strand, within DVU0236 at 269.826 kb on - strand, within DVU0236 at 269.826 kb on - strand, within DVU0236 at 269.922 kb on - strand, within DVU0236 at 269.922 kb on - strand, within DVU0236 at 269.925 kb on - strand, within DVU0236 at 269.925 kb on - strand, within DVU0236 at 269.943 kb on + strand, within DVU0236 at 269.957 kb on + strand, within DVU0236 at 270.013 kb on + strand, within DVU0236 at 270.057 kb on - strand, within DVU0236 at 270.062 kb on - strand, within DVU0236 at 270.118 kb on + strand, within DVU0236 at 270.120 kb on + strand, within DVU0236 at 270.130 kb on + strand, within DVU0236 at 270.138 kb on - strand, within DVU0236 at 270.164 kb on + strand, within DVU0236 at 270.180 kb on - strand, within DVU0236 at 270.187 kb on - strand, within DVU0236 at 270.203 kb on - strand, within DVU0236 at 270.232 kb on + strand, within DVU0236 at 270.294 kb on + strand, within DVU0236 at 270.386 kb on - strand at 270.393 kb on - strand at 270.393 kb on - strand at 270.422 kb on - strand at 270.652 kb on + strand at 272.016 kb on + strand at 272.022 kb on + strand at 272.164 kb on - strand, within DVU0238 at 272.187 kb on + strand, within DVU0238 at 272.243 kb on - strand, within DVU0238 at 272.299 kb on - strand, within DVU0238 at 272.299 kb on - strand, within DVU0238 at 272.309 kb on + strand, within DVU0238 at 272.383 kb on + strand, within DVU0238 at 272.416 kb on + strand at 272.506 kb on - strand at 272.855 kb on + strand at 272.863 kb on - strand at 272.863 kb on - strand at 272.923 kb on + strand at 272.928 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Lactate-Thiosulfate (15mM) minimal (MOLThioS4) remove 269,708 + DVU0236 0.37 -0.7 269,709 + DVU0236 0.37 +0.5 269,709 + DVU0236 0.37 -1.9 269,709 + DVU0236 0.37 +0.6 269,709 + DVU0236 0.37 +0.4 269,709 - DVU0236 0.37 -2.3 269,710 - DVU0236 0.37 +0.5 269,717 - DVU0236 0.38 -0.1 269,717 - DVU0236 0.38 -0.7 269,731 - DVU0236 0.39 +0.5 269,742 + DVU0236 0.40 -0.5 269,750 - DVU0236 0.41 +0.4 269,792 - DVU0236 0.45 -1.9 269,794 - DVU0236 0.45 -1.3 269,796 + DVU0236 0.45 -0.2 269,826 - DVU0236 0.48 +0.1 269,826 - DVU0236 0.48 -1.7 269,826 - DVU0236 0.48 -0.2 269,922 - DVU0236 0.56 -0.5 269,922 - DVU0236 0.56 +0.7 269,925 - DVU0236 0.56 +0.3 269,925 - DVU0236 0.56 -2.6 269,943 + DVU0236 0.58 +0.2 269,957 + DVU0236 0.59 +1.9 270,013 + DVU0236 0.64 -1.4 270,057 - DVU0236 0.68 -0.1 270,062 - DVU0236 0.68 -2.7 270,118 + DVU0236 0.73 -0.3 270,120 + DVU0236 0.73 -0.3 270,130 + DVU0236 0.74 -0.3 270,138 - DVU0236 0.75 +0.3 270,164 + DVU0236 0.77 -0.4 270,180 - DVU0236 0.78 -0.2 270,187 - DVU0236 0.79 -0.5 270,203 - DVU0236 0.80 +0.2 270,232 + DVU0236 0.83 -0.4 270,294 + DVU0236 0.88 -1.2 270,386 - -1.3 270,393 - -0.5 270,393 - -0.1 270,422 - -0.3 270,652 + +0.1 272,016 + +0.3 272,022 + +0.4 272,164 - DVU0238 0.31 -0.5 272,187 + DVU0238 0.36 +0.3 272,243 - DVU0238 0.51 +2.7 272,299 - DVU0238 0.65 +0.3 272,299 - DVU0238 0.65 +0.4 272,309 + DVU0238 0.68 -0.1 272,383 + DVU0238 0.87 +1.4 272,416 + +0.5 272,506 - +1.0 272,855 + -0.8 272,863 - -1.8 272,863 - -1.2 272,923 + +0.3 272,928 + +1.3
Or see this region's nucleotide sequence