Experiment: Lactate-Thiosulfate (15mM) minimal (MOLThioS4)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt patB and phsB are separated by 577 nucleotides phsB and phsA are separated by 9 nucleotides
DVU0171: patB - hemolysin-related protein (TIGR), at 213,725 to 214,906
patB
DVU0172: phsB - thiosulfate reductase (phsB) (Shelley Haveman), at 215,484 to 216,485
phsB
DVU0173: phsA - thiosulfate reductase (Shelley Haveman), at 216,495 to 218,591
phsA
Position (kb) 215
216
217 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 214.508 kb on - strand, within patB at 214.519 kb on + strand, within patB at 214.527 kb on - strand, within patB at 214.570 kb on - strand, within patB at 214.604 kb on + strand, within patB at 214.612 kb on - strand, within patB at 214.742 kb on + strand, within patB at 214.820 kb on + strand at 214.949 kb on + strand at 215.026 kb on + strand at 215.175 kb on - strand at 215.188 kb on + strand at 215.200 kb on + strand at 215.401 kb on + strand at 215.401 kb on + strand at 215.444 kb on + strand at 215.447 kb on + strand at 215.459 kb on + strand at 215.467 kb on - strand at 215.482 kb on + strand at 215.518 kb on - strand at 215.555 kb on + strand at 215.563 kb on - strand at 215.578 kb on + strand at 215.586 kb on - strand, within phsB at 215.627 kb on + strand, within phsB at 215.635 kb on - strand, within phsB at 215.674 kb on + strand, within phsB at 215.676 kb on + strand, within phsB at 215.747 kb on + strand, within phsB at 215.815 kb on - strand, within phsB at 215.822 kb on - strand, within phsB at 215.841 kb on - strand, within phsB at 215.879 kb on + strand, within phsB at 215.884 kb on - strand, within phsB at 215.887 kb on - strand, within phsB at 216.021 kb on + strand, within phsB at 216.021 kb on + strand, within phsB at 216.021 kb on + strand, within phsB at 216.031 kb on + strand, within phsB at 216.053 kb on + strand, within phsB at 216.053 kb on + strand, within phsB at 216.183 kb on + strand, within phsB at 216.280 kb on + strand, within phsB at 216.367 kb on - strand, within phsB at 216.405 kb on + strand at 216.405 kb on + strand at 216.417 kb on + strand at 216.434 kb on + strand at 216.434 kb on + strand at 216.442 kb on - strand at 216.461 kb on - strand at 216.516 kb on - strand at 216.569 kb on - strand at 216.569 kb on - strand at 216.591 kb on + strand at 216.689 kb on - strand at 216.691 kb on - strand at 216.703 kb on + strand at 216.740 kb on + strand, within phsA at 216.762 kb on + strand, within phsA at 216.775 kb on - strand, within phsA at 216.841 kb on + strand, within phsA at 216.855 kb on + strand, within phsA at 216.877 kb on - strand, within phsA at 216.943 kb on + strand, within phsA at 216.975 kb on - strand, within phsA at 216.990 kb on + strand, within phsA at 217.010 kb on - strand, within phsA at 217.116 kb on - strand, within phsA at 217.149 kb on + strand, within phsA at 217.275 kb on - strand, within phsA at 217.295 kb on - strand, within phsA at 217.430 kb on - strand, within phsA at 217.431 kb on - strand, within phsA at 217.452 kb on + strand, within phsA
Per-strain Table
Position Strand Gene LocusTag Fraction Lactate-Thiosulfate (15mM) minimal (MOLThioS4) remove 214,508 - patB DVU0171 0.66 +0.3 214,519 + patB DVU0171 0.67 +2.1 214,527 - patB DVU0171 0.68 -0.1 214,570 - patB DVU0171 0.71 -0.3 214,604 + patB DVU0171 0.74 -0.9 214,612 - patB DVU0171 0.75 -1.4 214,742 + patB DVU0171 0.86 -1.2 214,820 + -0.8 214,949 + +0.2 215,026 + +1.2 215,175 - -0.1 215,188 + +0.6 215,200 + -0.7 215,401 + -1.6 215,401 + +0.2 215,444 + +0.3 215,447 + -0.4 215,459 + -0.5 215,467 - -1.9 215,482 + -0.9 215,518 - -0.7 215,555 + +0.9 215,563 - -1.4 215,578 + -1.2 215,586 - phsB DVU0172 0.10 -1.9 215,627 + phsB DVU0172 0.14 -1.5 215,635 - phsB DVU0172 0.15 -2.1 215,674 + phsB DVU0172 0.19 -1.3 215,676 + phsB DVU0172 0.19 -0.7 215,747 + phsB DVU0172 0.26 -1.7 215,815 - phsB DVU0172 0.33 -1.6 215,822 - phsB DVU0172 0.34 -2.7 215,841 - phsB DVU0172 0.36 -1.4 215,879 + phsB DVU0172 0.39 -1.0 215,884 - phsB DVU0172 0.40 -1.1 215,887 - phsB DVU0172 0.40 -0.5 216,021 + phsB DVU0172 0.54 -1.0 216,021 + phsB DVU0172 0.54 -1.8 216,021 + phsB DVU0172 0.54 +0.2 216,031 + phsB DVU0172 0.55 -1.6 216,053 + phsB DVU0172 0.57 -0.6 216,053 + phsB DVU0172 0.57 -0.5 216,183 + phsB DVU0172 0.70 -1.0 216,280 + phsB DVU0172 0.79 -0.5 216,367 - phsB DVU0172 0.88 -1.4 216,405 + -1.2 216,405 + -2.2 216,417 + -2.1 216,434 + -0.1 216,434 + -0.9 216,442 - -1.1 216,461 - -0.5 216,516 - -0.5 216,569 - -1.6 216,569 - -1.2 216,591 + -0.7 216,689 - -1.7 216,691 - +0.1 216,703 + -0.5 216,740 + phsA DVU0173 0.12 -1.6 216,762 + phsA DVU0173 0.13 -1.4 216,775 - phsA DVU0173 0.13 -0.8 216,841 + phsA DVU0173 0.16 -1.3 216,855 + phsA DVU0173 0.17 +1.0 216,877 - phsA DVU0173 0.18 -3.9 216,943 + phsA DVU0173 0.21 -1.5 216,975 - phsA DVU0173 0.23 -1.6 216,990 + phsA DVU0173 0.24 -1.9 217,010 - phsA DVU0173 0.25 -1.3 217,116 - phsA DVU0173 0.30 -2.5 217,149 + phsA DVU0173 0.31 -0.5 217,275 - phsA DVU0173 0.37 -1.5 217,295 - phsA DVU0173 0.38 -2.6 217,430 - phsA DVU0173 0.45 -1.5 217,431 - phsA DVU0173 0.45 -1.2 217,452 + phsA DVU0173 0.46 -1.8
Or see this region's nucleotide sequence