Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU2044

Experiment: Lactate-Thiosulfate (15mM) minimal (MOLThioS4)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDVU2043 and DVU2044 are separated by 108 nucleotidesDVU2044 and DVU2045 overlap by 8 nucleotidesDVU2045 and DVU2046 are separated by 139 nucleotidesDVU2046 and DORF15206 overlap by 16 nucleotides DVU2043: DVU2043 - conserved hypothetical protein (TIGR), at 2,120,862 to 2,122,463 DVU2043 DVU2044: DVU2044 - hypothetical protein (TIGR), at 2,122,572 to 2,122,697 DVU2044 DVU2045: DVU2045 - hypothetical protein (TIGR), at 2,122,690 to 2,122,872 DVU2045 DVU2046: DVU2046 - hypothetical protein (TIGR), at 2,123,012 to 2,123,182 DVU2046 DORF15206: DORF15206 - no description, at 2,123,167 to 2,125,602 DORF15206 Position (kb) 2122 2123Strain fitness (log2 ratio) -2 -1 0 1 2at 2121.641 kb on + strand, within DVU2043at 2121.641 kb on + strand, within DVU2043at 2121.651 kb on - strand, within DVU2043at 2121.742 kb on - strand, within DVU2043at 2121.801 kb on - strand, within DVU2043at 2121.860 kb on + strand, within DVU2043at 2121.887 kb on + strand, within DVU2043at 2121.957 kb on + strand, within DVU2043at 2121.957 kb on + strand, within DVU2043at 2122.006 kb on - strand, within DVU2043at 2122.006 kb on - strand, within DVU2043at 2122.022 kb on + strand, within DVU2043at 2122.110 kb on + strand, within DVU2043at 2122.110 kb on - strand, within DVU2043at 2122.119 kb on + strand, within DVU2043at 2122.211 kb on - strand, within DVU2043at 2122.223 kb on - strand, within DVU2043at 2122.306 kb on + strandat 2122.424 kb on + strandat 2122.424 kb on + strandat 2122.483 kb on + strandat 2122.491 kb on - strandat 2122.526 kb on - strandat 2122.532 kb on - strandat 2122.537 kb on - strandat 2122.641 kb on - strand, within DVU2044at 2122.659 kb on + strand, within DVU2044at 2122.694 kb on - strandat 2122.711 kb on + strand, within DVU2045at 2122.860 kb on - strandat 2122.864 kb on + strandat 2122.889 kb on + strandat 2122.900 kb on + strandat 2123.086 kb on - strand, within DVU2046at 2123.164 kb on + strand, within DVU2046at 2123.172 kb on - strandat 2123.336 kb on - strandat 2123.399 kb on - strandat 2123.408 kb on + strandat 2123.463 kb on - strand, within DORF15206at 2123.463 kb on - strand, within DORF15206at 2123.472 kb on + strand, within DORF15206at 2123.536 kb on - strand, within DORF15206at 2123.536 kb on - strand, within DORF15206at 2123.536 kb on - strand, within DORF15206at 2123.536 kb on - strand, within DORF15206at 2123.605 kb on - strand, within DORF15206at 2123.690 kb on + strand, within DORF15206

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Lactate-Thiosulfate (15mM) minimal (MOLThioS4)
remove
2,121,641 + DVU2043 0.49 -0.0
2,121,641 + DVU2043 0.49 -1.0
2,121,651 - DVU2043 0.49 +1.4
2,121,742 - DVU2043 0.55 +1.0
2,121,801 - DVU2043 0.59 -1.2
2,121,860 + DVU2043 0.62 -0.0
2,121,887 + DVU2043 0.64 +0.1
2,121,957 + DVU2043 0.68 +0.6
2,121,957 + DVU2043 0.68 +0.2
2,122,006 - DVU2043 0.71 +0.5
2,122,006 - DVU2043 0.71 +0.4
2,122,022 + DVU2043 0.72 +0.3
2,122,110 + DVU2043 0.78 -0.1
2,122,110 - DVU2043 0.78 +0.3
2,122,119 + DVU2043 0.78 -0.5
2,122,211 - DVU2043 0.84 -0.4
2,122,223 - DVU2043 0.85 +0.0
2,122,306 + -0.8
2,122,424 + -1.0
2,122,424 + -0.2
2,122,483 + -0.4
2,122,491 - -0.2
2,122,526 - -0.4
2,122,532 - +0.1
2,122,537 - -1.0
2,122,641 - DVU2044 0.55 -0.6
2,122,659 + DVU2044 0.69 -1.5
2,122,694 - -1.2
2,122,711 + DVU2045 0.11 +0.5
2,122,860 - -0.4
2,122,864 + +0.2
2,122,889 + +1.6
2,122,900 + -0.4
2,123,086 - DVU2046 0.43 -1.3
2,123,164 + DVU2046 0.89 +0.1
2,123,172 - +0.1
2,123,336 - -0.7
2,123,399 - +1.5
2,123,408 + -1.9
2,123,463 - DORF15206 0.12 +0.7
2,123,463 - DORF15206 0.12 -0.5
2,123,472 + DORF15206 0.13 -1.2
2,123,536 - DORF15206 0.15 +1.0
2,123,536 - DORF15206 0.15 +2.0
2,123,536 - DORF15206 0.15 -2.4
2,123,536 - DORF15206 0.15 -0.1
2,123,605 - DORF15206 0.18 -1.5
2,123,690 + DORF15206 0.21 -0.5

Or see this region's nucleotide sequence