Experiment: DMS3_0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IKLFDK_28765 and IKLFDK_28770 are separated by 140 nucleotides IKLFDK_28770 and IKLFDK_28775 are separated by 19 nucleotides
IKLFDK_28765: IKLFDK_28765 - histidine kinase, at 6,248,708 to 6,250,219
_28765
IKLFDK_28770: IKLFDK_28770 - flagellar motor protein, at 6,250,360 to 6,251,211
_28770
IKLFDK_28775: IKLFDK_28775 - flagellar motor protein, at 6,251,231 to 6,252,274
_28775
Position (kb)
6250
6251
6252 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 6249.387 kb on + strand, within IKLFDK_28765 at 6249.387 kb on + strand, within IKLFDK_28765 at 6249.387 kb on + strand, within IKLFDK_28765 at 6249.387 kb on + strand, within IKLFDK_28765 at 6249.387 kb on + strand, within IKLFDK_28765 at 6249.569 kb on - strand, within IKLFDK_28765 at 6249.728 kb on + strand, within IKLFDK_28765 at 6249.728 kb on + strand, within IKLFDK_28765 at 6249.728 kb on + strand, within IKLFDK_28765 at 6249.729 kb on - strand, within IKLFDK_28765 at 6250.149 kb on + strand at 6250.150 kb on - strand at 6250.150 kb on - strand at 6250.150 kb on - strand at 6250.150 kb on - strand at 6250.150 kb on - strand at 6250.150 kb on - strand at 6250.267 kb on - strand at 6250.275 kb on + strand at 6250.275 kb on + strand at 6250.275 kb on + strand at 6250.275 kb on + strand at 6250.276 kb on - strand at 6250.276 kb on - strand at 6250.276 kb on - strand at 6250.276 kb on - strand at 6250.276 kb on - strand at 6250.276 kb on - strand at 6250.277 kb on + strand at 6250.277 kb on + strand at 6250.277 kb on + strand at 6250.277 kb on + strand at 6250.277 kb on + strand at 6250.277 kb on + strand at 6250.278 kb on - strand at 6250.278 kb on - strand at 6250.278 kb on - strand at 6250.278 kb on - strand at 6250.278 kb on - strand at 6250.278 kb on - strand at 6250.278 kb on - strand at 6250.278 kb on - strand at 6250.278 kb on - strand at 6250.278 kb on - strand at 6250.278 kb on - strand at 6250.278 kb on - strand at 6250.290 kb on - strand at 6250.314 kb on + strand at 6250.314 kb on + strand at 6250.314 kb on + strand at 6250.314 kb on + strand at 6250.315 kb on - strand at 6250.315 kb on - strand at 6250.331 kb on - strand at 6250.576 kb on + strand, within IKLFDK_28770 at 6250.576 kb on + strand, within IKLFDK_28770 at 6250.576 kb on + strand, within IKLFDK_28770 at 6250.576 kb on + strand, within IKLFDK_28770 at 6250.576 kb on + strand, within IKLFDK_28770 at 6250.576 kb on + strand, within IKLFDK_28770 at 6250.576 kb on + strand, within IKLFDK_28770 at 6250.576 kb on + strand, within IKLFDK_28770 at 6250.576 kb on + strand, within IKLFDK_28770 at 6250.576 kb on + strand, within IKLFDK_28770 at 6250.576 kb on + strand, within IKLFDK_28770 at 6250.577 kb on - strand, within IKLFDK_28770 at 6250.577 kb on - strand, within IKLFDK_28770 at 6250.577 kb on - strand, within IKLFDK_28770 at 6250.577 kb on - strand, within IKLFDK_28770 at 6250.577 kb on - strand, within IKLFDK_28770 at 6250.577 kb on - strand, within IKLFDK_28770 at 6250.577 kb on - strand, within IKLFDK_28770 at 6250.577 kb on - strand, within IKLFDK_28770 at 6250.577 kb on - strand, within IKLFDK_28770 at 6250.577 kb on - strand, within IKLFDK_28770 at 6250.577 kb on - strand, within IKLFDK_28770 at 6250.577 kb on - strand, within IKLFDK_28770 at 6250.579 kb on + strand, within IKLFDK_28770 at 6250.579 kb on + strand, within IKLFDK_28770 at 6250.579 kb on + strand, within IKLFDK_28770 at 6250.579 kb on + strand, within IKLFDK_28770 at 6250.579 kb on + strand, within IKLFDK_28770 at 6250.579 kb on + strand, within IKLFDK_28770 at 6250.579 kb on + strand, within IKLFDK_28770 at 6250.579 kb on + strand, within IKLFDK_28770 at 6250.579 kb on + strand, within IKLFDK_28770 at 6250.579 kb on + strand, within IKLFDK_28770 at 6250.580 kb on - strand, within IKLFDK_28770 at 6250.580 kb on - strand, within IKLFDK_28770 at 6250.580 kb on - strand, within IKLFDK_28770 at 6250.580 kb on - strand, within IKLFDK_28770 at 6250.603 kb on + strand, within IKLFDK_28770 at 6250.603 kb on + strand, within IKLFDK_28770 at 6250.604 kb on - strand, within IKLFDK_28770 at 6250.604 kb on - strand, within IKLFDK_28770 at 6250.604 kb on - strand, within IKLFDK_28770 at 6250.693 kb on + strand, within IKLFDK_28770 at 6250.693 kb on + strand, within IKLFDK_28770 at 6250.694 kb on - strand, within IKLFDK_28770 at 6250.694 kb on - strand, within IKLFDK_28770 at 6250.729 kb on + strand, within IKLFDK_28770 at 6250.729 kb on + strand, within IKLFDK_28770 at 6250.729 kb on + strand, within IKLFDK_28770 at 6250.729 kb on + strand, within IKLFDK_28770 at 6250.729 kb on + strand, within IKLFDK_28770 at 6250.729 kb on + strand, within IKLFDK_28770 at 6250.729 kb on + strand, within IKLFDK_28770 at 6250.729 kb on + strand, within IKLFDK_28770 at 6250.729 kb on + strand, within IKLFDK_28770 at 6250.729 kb on + strand, within IKLFDK_28770 at 6250.729 kb on + strand, within IKLFDK_28770 at 6250.729 kb on + strand, within IKLFDK_28770 at 6250.729 kb on + strand, within IKLFDK_28770 at 6250.730 kb on - strand, within IKLFDK_28770 at 6250.730 kb on - strand, within IKLFDK_28770 at 6250.730 kb on - strand, within IKLFDK_28770 at 6250.730 kb on - strand, within IKLFDK_28770 at 6250.730 kb on - strand, within IKLFDK_28770 at 6250.730 kb on - strand, within IKLFDK_28770 at 6250.730 kb on - strand, within IKLFDK_28770 at 6250.730 kb on - strand, within IKLFDK_28770 at 6250.730 kb on - strand, within IKLFDK_28770 at 6250.730 kb on - strand, within IKLFDK_28770 at 6250.730 kb on - strand, within IKLFDK_28770 at 6250.730 kb on - strand, within IKLFDK_28770 at 6250.741 kb on + strand, within IKLFDK_28770 at 6250.741 kb on + strand, within IKLFDK_28770 at 6250.741 kb on + strand, within IKLFDK_28770 at 6250.884 kb on + strand, within IKLFDK_28770 at 6250.983 kb on + strand, within IKLFDK_28770 at 6250.984 kb on - strand, within IKLFDK_28770 at 6251.228 kb on + strand at 6251.228 kb on + strand at 6251.228 kb on + strand at 6251.228 kb on + strand at 6251.228 kb on + strand at 6251.229 kb on - strand at 6251.229 kb on - strand at 6251.229 kb on - strand at 6251.229 kb on - strand at 6251.239 kb on + strand at 6251.240 kb on - strand at 6251.273 kb on + strand at 6251.273 kb on + strand at 6251.447 kb on + strand, within IKLFDK_28775 at 6251.447 kb on + strand, within IKLFDK_28775 at 6251.448 kb on - strand, within IKLFDK_28775 at 6251.783 kb on + strand, within IKLFDK_28775 at 6251.784 kb on - strand, within IKLFDK_28775 at 6251.873 kb on + strand, within IKLFDK_28775 at 6251.873 kb on + strand, within IKLFDK_28775 at 6251.874 kb on - strand, within IKLFDK_28775 at 6251.907 kb on + strand, within IKLFDK_28775 at 6251.907 kb on + strand, within IKLFDK_28775 at 6251.990 kb on + strand, within IKLFDK_28775 at 6251.990 kb on + strand, within IKLFDK_28775
Per-strain Table
Position Strand Gene LocusTag Fraction DMS3_0.1 remove 6,249,387 + IKLFDK_28765 0.45 -1.1 6,249,387 + IKLFDK_28765 0.45 -0.6 6,249,387 + IKLFDK_28765 0.45 -2.8 6,249,387 + IKLFDK_28765 0.45 -0.7 6,249,387 + IKLFDK_28765 0.45 -2.8 6,249,569 - IKLFDK_28765 0.57 -0.0 6,249,728 + IKLFDK_28765 0.67 -0.9 6,249,728 + IKLFDK_28765 0.67 -1.1 6,249,728 + IKLFDK_28765 0.67 -0.3 6,249,729 - IKLFDK_28765 0.68 -2.9 6,250,149 + -1.2 6,250,150 - -0.1 6,250,150 - -1.5 6,250,150 - -1.6 6,250,150 - +0.6 6,250,150 - -1.2 6,250,150 - -0.2 6,250,267 - +0.1 6,250,275 + +0.2 6,250,275 + -0.1 6,250,275 + -1.9 6,250,275 + +1.4 6,250,276 - -2.6 6,250,276 - -1.1 6,250,276 - -1.6 6,250,276 - -1.4 6,250,276 - -0.3 6,250,276 - -0.2 6,250,277 + -1.0 6,250,277 + +0.3 6,250,277 + -2.0 6,250,277 + +0.1 6,250,277 + -1.2 6,250,277 + -2.0 6,250,278 - -0.3 6,250,278 - +2.4 6,250,278 - +1.0 6,250,278 - +0.4 6,250,278 - +0.9 6,250,278 - -3.0 6,250,278 - -0.5 6,250,278 - +0.8 6,250,278 - -1.2 6,250,278 - +0.4 6,250,278 - -0.5 6,250,278 - -0.6 6,250,290 - -0.3 6,250,314 + +0.2 6,250,314 + -0.9 6,250,314 + -0.4 6,250,314 + -0.9 6,250,315 - +0.9 6,250,315 - +1.8 6,250,331 - +1.6 6,250,576 + IKLFDK_28770 0.25 -0.5 6,250,576 + IKLFDK_28770 0.25 -0.8 6,250,576 + IKLFDK_28770 0.25 -1.7 6,250,576 + IKLFDK_28770 0.25 -1.2 6,250,576 + IKLFDK_28770 0.25 -0.2 6,250,576 + IKLFDK_28770 0.25 +1.5 6,250,576 + IKLFDK_28770 0.25 -1.4 6,250,576 + IKLFDK_28770 0.25 -1.4 6,250,576 + IKLFDK_28770 0.25 -1.4 6,250,576 + IKLFDK_28770 0.25 -0.6 6,250,576 + IKLFDK_28770 0.25 -1.0 6,250,577 - IKLFDK_28770 0.25 -0.5 6,250,577 - IKLFDK_28770 0.25 -0.5 6,250,577 - IKLFDK_28770 0.25 +1.8 6,250,577 - IKLFDK_28770 0.25 -0.4 6,250,577 - IKLFDK_28770 0.25 -0.9 6,250,577 - IKLFDK_28770 0.25 -2.2 6,250,577 - IKLFDK_28770 0.25 +0.9 6,250,577 - IKLFDK_28770 0.25 -0.7 6,250,577 - IKLFDK_28770 0.25 -0.9 6,250,577 - IKLFDK_28770 0.25 -1.4 6,250,577 - IKLFDK_28770 0.25 +0.0 6,250,577 - IKLFDK_28770 0.25 -2.4 6,250,579 + IKLFDK_28770 0.26 -1.1 6,250,579 + IKLFDK_28770 0.26 +0.6 6,250,579 + IKLFDK_28770 0.26 -2.4 6,250,579 + IKLFDK_28770 0.26 -1.7 6,250,579 + IKLFDK_28770 0.26 +0.0 6,250,579 + IKLFDK_28770 0.26 -1.6 6,250,579 + IKLFDK_28770 0.26 -1.1 6,250,579 + IKLFDK_28770 0.26 -1.7 6,250,579 + IKLFDK_28770 0.26 -2.0 6,250,579 + IKLFDK_28770 0.26 -2.2 6,250,580 - IKLFDK_28770 0.26 -0.6 6,250,580 - IKLFDK_28770 0.26 -0.5 6,250,580 - IKLFDK_28770 0.26 -0.2 6,250,580 - IKLFDK_28770 0.26 -1.0 6,250,603 + IKLFDK_28770 0.29 -0.2 6,250,603 + IKLFDK_28770 0.29 -0.7 6,250,604 - IKLFDK_28770 0.29 -1.0 6,250,604 - IKLFDK_28770 0.29 -0.4 6,250,604 - IKLFDK_28770 0.29 +0.0 6,250,693 + IKLFDK_28770 0.39 +0.0 6,250,693 + IKLFDK_28770 0.39 -1.9 6,250,694 - IKLFDK_28770 0.39 -1.7 6,250,694 - IKLFDK_28770 0.39 +1.4 6,250,729 + IKLFDK_28770 0.43 +0.4 6,250,729 + IKLFDK_28770 0.43 -0.7 6,250,729 + IKLFDK_28770 0.43 -0.7 6,250,729 + IKLFDK_28770 0.43 -1.4 6,250,729 + IKLFDK_28770 0.43 +0.4 6,250,729 + IKLFDK_28770 0.43 -1.2 6,250,729 + IKLFDK_28770 0.43 -1.7 6,250,729 + IKLFDK_28770 0.43 -1.3 6,250,729 + IKLFDK_28770 0.43 -1.5 6,250,729 + IKLFDK_28770 0.43 +0.9 6,250,729 + IKLFDK_28770 0.43 -2.6 6,250,729 + IKLFDK_28770 0.43 -1.2 6,250,729 + IKLFDK_28770 0.43 -2.1 6,250,730 - IKLFDK_28770 0.43 -1.1 6,250,730 - IKLFDK_28770 0.43 -1.7 6,250,730 - IKLFDK_28770 0.43 +0.3 6,250,730 - IKLFDK_28770 0.43 -0.3 6,250,730 - IKLFDK_28770 0.43 +0.2 6,250,730 - IKLFDK_28770 0.43 -1.9 6,250,730 - IKLFDK_28770 0.43 -0.1 6,250,730 - IKLFDK_28770 0.43 -0.7 6,250,730 - IKLFDK_28770 0.43 -1.1 6,250,730 - IKLFDK_28770 0.43 -2.8 6,250,730 - IKLFDK_28770 0.43 -2.2 6,250,730 - IKLFDK_28770 0.43 -2.2 6,250,741 + IKLFDK_28770 0.45 -1.5 6,250,741 + IKLFDK_28770 0.45 -0.1 6,250,741 + IKLFDK_28770 0.45 -0.2 6,250,884 + IKLFDK_28770 0.62 -0.1 6,250,983 + IKLFDK_28770 0.73 -0.3 6,250,984 - IKLFDK_28770 0.73 +1.0 6,251,228 + -1.3 6,251,228 + +0.0 6,251,228 + +0.1 6,251,228 + -0.3 6,251,228 + +1.0 6,251,229 - +0.2 6,251,229 - -1.3 6,251,229 - -1.3 6,251,229 - -0.9 6,251,239 + -0.0 6,251,240 - -1.2 6,251,273 + -0.8 6,251,273 + -1.3 6,251,447 + IKLFDK_28775 0.21 -1.1 6,251,447 + IKLFDK_28775 0.21 +1.0 6,251,448 - IKLFDK_28775 0.21 -3.1 6,251,783 + IKLFDK_28775 0.53 +0.2 6,251,784 - IKLFDK_28775 0.53 +0.3 6,251,873 + IKLFDK_28775 0.61 +0.0 6,251,873 + IKLFDK_28775 0.61 -0.5 6,251,874 - IKLFDK_28775 0.62 -0.5 6,251,907 + IKLFDK_28775 0.65 -1.1 6,251,907 + IKLFDK_28775 0.65 +0.2 6,251,990 + IKLFDK_28775 0.73 +0.9 6,251,990 + IKLFDK_28775 0.73 -1.5
Or see this region's nucleotide sequence