Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1179

Experiment: MoLS4 without Molybdate/Tungstate

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDVU1177 and aor are separated by 154 nucleotidesaor and DVU1180 are separated by 226 nucleotidesDVU1180 and DVU1181 are separated by 13 nucleotides DVU1177: DVU1177 - hypothetical protein (TIGR), at 1,268,360 to 1,269,022 DVU1177 DVU1179: aor - aldehyde:ferredoxin oxidoreductase, tungsten-containing (TIGR), at 1,269,177 to 1,270,907 aor DVU1180: DVU1180 - hypothetical protein (TIGR), at 1,271,134 to 1,271,358 DVU1180 DVU1181: DVU1181 - response regulator (TIGR), at 1,271,372 to 1,272,442 DVU1181 Position (kb) 1269 1270 1271Strain fitness (log2 ratio) -1 0 1at 1268.208 kb on + strandat 1268.216 kb on - strandat 1268.216 kb on - strandat 1268.229 kb on + strandat 1268.235 kb on - strandat 1268.267 kb on + strandat 1268.269 kb on + strandat 1268.383 kb on - strandat 1268.422 kb on + strandat 1268.430 kb on - strand, within DVU1177at 1268.447 kb on + strand, within DVU1177at 1268.455 kb on - strand, within DVU1177at 1268.455 kb on - strand, within DVU1177at 1268.474 kb on - strand, within DVU1177at 1268.498 kb on - strand, within DVU1177at 1268.563 kb on + strand, within DVU1177at 1268.587 kb on - strand, within DVU1177at 1268.592 kb on - strand, within DVU1177at 1268.639 kb on - strand, within DVU1177at 1268.732 kb on - strand, within DVU1177at 1268.752 kb on + strand, within DVU1177at 1268.841 kb on - strand, within DVU1177at 1268.846 kb on - strand, within DVU1177at 1268.858 kb on - strand, within DVU1177at 1269.074 kb on + strandat 1269.074 kb on + strandat 1269.176 kb on - strandat 1269.228 kb on + strandat 1269.246 kb on + strandat 1269.316 kb on + strandat 1269.323 kb on + strandat 1269.358 kb on + strand, within aorat 1269.405 kb on + strand, within aorat 1269.408 kb on + strand, within aorat 1269.436 kb on - strand, within aorat 1269.451 kb on + strand, within aorat 1269.589 kb on + strand, within aorat 1269.589 kb on + strand, within aorat 1269.647 kb on + strand, within aorat 1269.776 kb on - strand, within aorat 1269.814 kb on - strand, within aorat 1269.955 kb on - strand, within aorat 1270.083 kb on + strand, within aorat 1270.143 kb on + strand, within aorat 1270.231 kb on + strand, within aorat 1270.239 kb on - strand, within aorat 1270.333 kb on + strand, within aorat 1270.333 kb on + strand, within aorat 1270.341 kb on - strand, within aorat 1270.586 kb on + strand, within aorat 1270.629 kb on + strand, within aorat 1270.630 kb on + strand, within aorat 1270.714 kb on + strand, within aorat 1270.717 kb on - strand, within aorat 1270.722 kb on - strand, within aorat 1270.722 kb on - strand, within aorat 1270.836 kb on + strandat 1270.902 kb on + strandat 1270.902 kb on + strandat 1270.910 kb on - strandat 1270.910 kb on - strandat 1270.910 kb on - strandat 1270.937 kb on + strandat 1270.939 kb on + strandat 1270.939 kb on + strandat 1270.939 kb on + strandat 1270.939 kb on + strandat 1270.939 kb on + strandat 1270.947 kb on - strandat 1271.078 kb on - strandat 1271.143 kb on + strandat 1271.161 kb on - strand, within DVU1180at 1271.372 kb on + strandat 1271.382 kb on + strandat 1271.425 kb on + strandat 1271.493 kb on + strand, within DVU1181at 1271.493 kb on + strand, within DVU1181at 1271.501 kb on - strand, within DVU1181at 1271.522 kb on - strand, within DVU1181at 1271.527 kb on + strand, within DVU1181at 1271.541 kb on + strand, within DVU1181at 1271.549 kb on - strand, within DVU1181at 1271.830 kb on + strand, within DVU1181

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 without Molybdate/Tungstate
remove
1,268,208 + -0.3
1,268,216 - -0.2
1,268,216 - -0.4
1,268,229 + -0.8
1,268,235 - -0.5
1,268,267 + -0.3
1,268,269 + -0.5
1,268,383 - -0.6
1,268,422 + +0.1
1,268,430 - DVU1177 0.11 -0.4
1,268,447 + DVU1177 0.13 -0.0
1,268,455 - DVU1177 0.14 -0.2
1,268,455 - DVU1177 0.14 -0.0
1,268,474 - DVU1177 0.17 -1.3
1,268,498 - DVU1177 0.21 -0.2
1,268,563 + DVU1177 0.31 -0.7
1,268,587 - DVU1177 0.34 +0.8
1,268,592 - DVU1177 0.35 +0.2
1,268,639 - DVU1177 0.42 +0.2
1,268,732 - DVU1177 0.56 -0.1
1,268,752 + DVU1177 0.59 +1.2
1,268,841 - DVU1177 0.73 -0.2
1,268,846 - DVU1177 0.73 +1.1
1,268,858 - DVU1177 0.75 -0.0
1,269,074 + +0.8
1,269,074 + +0.2
1,269,176 - -0.1
1,269,228 + +0.5
1,269,246 + +0.1
1,269,316 + -0.4
1,269,323 + +0.6
1,269,358 + aor DVU1179 0.10 +0.9
1,269,405 + aor DVU1179 0.13 +0.3
1,269,408 + aor DVU1179 0.13 -0.2
1,269,436 - aor DVU1179 0.15 +0.1
1,269,451 + aor DVU1179 0.16 -0.2
1,269,589 + aor DVU1179 0.24 -0.4
1,269,589 + aor DVU1179 0.24 +0.2
1,269,647 + aor DVU1179 0.27 +0.1
1,269,776 - aor DVU1179 0.35 +0.2
1,269,814 - aor DVU1179 0.37 +0.1
1,269,955 - aor DVU1179 0.45 -1.2
1,270,083 + aor DVU1179 0.52 +0.0
1,270,143 + aor DVU1179 0.56 +0.4
1,270,231 + aor DVU1179 0.61 +0.7
1,270,239 - aor DVU1179 0.61 -0.0
1,270,333 + aor DVU1179 0.67 -0.1
1,270,333 + aor DVU1179 0.67 -0.1
1,270,341 - aor DVU1179 0.67 +0.4
1,270,586 + aor DVU1179 0.81 +0.5
1,270,629 + aor DVU1179 0.84 -0.0
1,270,630 + aor DVU1179 0.84 +0.0
1,270,714 + aor DVU1179 0.89 +1.1
1,270,717 - aor DVU1179 0.89 -0.2
1,270,722 - aor DVU1179 0.89 -0.6
1,270,722 - aor DVU1179 0.89 +0.2
1,270,836 + +0.0
1,270,902 + -0.3
1,270,902 + -0.2
1,270,910 - +0.3
1,270,910 - -1.1
1,270,910 - +0.3
1,270,937 + -0.5
1,270,939 + +1.5
1,270,939 + +0.2
1,270,939 + +0.1
1,270,939 + -0.1
1,270,939 + -0.5
1,270,947 - -1.1
1,271,078 - -0.3
1,271,143 + -0.8
1,271,161 - DVU1180 0.12 +0.0
1,271,372 + -0.2
1,271,382 + -0.7
1,271,425 + -0.6
1,271,493 + DVU1181 0.11 -0.5
1,271,493 + DVU1181 0.11 -0.4
1,271,501 - DVU1181 0.12 -0.5
1,271,522 - DVU1181 0.14 -1.0
1,271,527 + DVU1181 0.14 -0.8
1,271,541 + DVU1181 0.16 -1.1
1,271,549 - DVU1181 0.17 -0.5
1,271,830 + DVU1181 0.43 +0.0

Or see this region's nucleotide sequence