Experiment: L-Glutamine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv2498c and Rv2499c overlap by 4 nucleotides Rv2499c and Rv2500c overlap by 4 nucleotides Rv2500c and Rv2501c are separated by 4 nucleotides
Rv2498c: Rv2498c - Probable citrate (pro-3S)-lyase (beta subunit) CitE (citrase) (citratase) (citritase) (citridesmolase) (citrase aldolase), at 2,812,355 to 2,813,176
Rv2498c
Rv2499c: Rv2499c - Possible oxidase regulatory-related protein, at 2,813,173 to 2,813,730
Rv2499c
Rv2500c: Rv2500c - Possible acyl-CoA dehydrogenase FadE19 (MMGC), at 2,813,727 to 2,814,911
Rv2500c
Rv2501c: Rv2501c - Probable acetyl-/propionyl-coenzyme A carboxylase alpha chain (alpha subunit) AccA1: biotin carboxylase + biotin carboxyl carrier protein (BCCP), at 2,814,916 to 2,816,880
Rv2501c
Position (kb)
2813
2814
2815 Strain fitness (log2 ratio)
-1
0
1 at 2812.921 kb on + strand, within Rv2498c at 2812.921 kb on + strand, within Rv2498c at 2812.924 kb on - strand, within Rv2498c at 2812.969 kb on + strand, within Rv2498c at 2812.969 kb on + strand, within Rv2498c at 2813.600 kb on + strand, within Rv2499c at 2813.840 kb on + strand at 2814.272 kb on + strand, within Rv2500c at 2814.918 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamine (C) remove 2,812,921 + Rv2498c 0.69 +0.0 2,812,921 + Rv2498c 0.69 -0.5 2,812,924 - Rv2498c 0.69 -0.6 2,812,969 + Rv2498c 0.75 +0.1 2,812,969 + Rv2498c 0.75 -0.1 2,813,600 + Rv2499c 0.77 -1.1 2,813,840 + -0.5 2,814,272 + Rv2500c 0.46 -0.9 2,814,918 - +0.7
Or see this region's nucleotide sequence