Experiment: L-Glutamine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0732 and Rv0733 overlap by 4 nucleotides Rv0733 and Rv0734 are separated by 2 nucleotides Rv0734 and Rv0735 are separated by 72 nucleotides Rv0735 and Rv0736 are separated by 63 nucleotides
Rv0732: Rv0732 - Probable preprotein translocase SecY, at 824,800 to 826,125
Rv0732
Rv0733: Rv0733 - Adenylate kinase Adk (ATP-AMP transphosphorylase), at 826,122 to 826,667
Rv0733
Rv0734: Rv0734 - Methionine aminopeptidase MapA (map) (peptidase M) (MetAP), at 826,670 to 827,470
Rv0734
Rv0735: Rv0735 - Probable alternative RNA polymerase sigma factor SigL, at 827,543 to 828,076
Rv0735
Rv0736: Rv0736 - Anti-sigma factor RslA, at 828,140 to 828,892
Rv0736
Position (kb) 826
827
828 Strain fitness (log2 ratio) -1
0
1 at 826.665 kb on + strand at 826.978 kb on - strand, within Rv0734 at 827.248 kb on + strand, within Rv0734 at 827.249 kb on - strand, within Rv0734 at 827.468 kb on + strand at 827.598 kb on - strand, within Rv0735 at 827.628 kb on - strand, within Rv0735 at 827.923 kb on + strand, within Rv0735 at 827.924 kb on - strand, within Rv0735 at 827.946 kb on - strand, within Rv0735 at 827.948 kb on + strand, within Rv0735 at 828.023 kb on + strand at 828.024 kb on - strand at 828.067 kb on + strand at 828.112 kb on + strand at 828.112 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamine (C) remove 826,665 + -0.8 826,978 - Rv0734 0.38 -0.5 827,248 + Rv0734 0.72 -0.9 827,249 - Rv0734 0.72 -0.6 827,468 + -0.3 827,598 - Rv0735 0.10 -0.0 827,628 - Rv0735 0.16 -0.4 827,923 + Rv0735 0.71 -0.2 827,924 - Rv0735 0.71 -0.2 827,946 - Rv0735 0.75 -0.6 827,948 + Rv0735 0.76 +0.8 828,023 + +0.5 828,024 - -0.4 828,067 + -0.5 828,112 + -0.8 828,112 + -0.2
Or see this region's nucleotide sequence