Experiment: L-Glutamine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0246 and Rv0247c overlap by 4 nucleotides Rv0247c and Rv0248c are separated by 0 nucleotides Rv0248c and Rv0249c are separated by 30 nucleotides Rv0249c and Rv0250c are separated by 79 nucleotides
Rv0246: Rv0246 - Probable conserved integral membrane protein, at 296,809 to 298,119
Rv0246
Rv0247c: Rv0247c - Probable succinate dehydrogenase [iron-sulfur subunit] (succinic dehydrogenase), at 298,116 to 298,862
Rv0247c
Rv0248c: Rv0248c - Probable succinate dehydrogenase [iron-sulfur subunit] (succinic dehydrogenase), at 298,863 to 300,803
Rv0248c
Rv0249c: Rv0249c - Probable succinate dehydrogenase [membrane anchor subunit] (succinic dehydrogenase), at 300,834 to 301,655
Rv0249c
Rv0250c: Rv0250c - Conserved protein, at 301,735 to 302,028
Rv0250c
Position (kb) 298
299
300
301 Strain fitness (log2 ratio) -2
-1
0
1 at 298.105 kb on - strand at 298.146 kb on + strand at 298.253 kb on + strand, within Rv0247c at 299.230 kb on - strand, within Rv0248c at 299.240 kb on - strand, within Rv0248c at 299.327 kb on - strand, within Rv0248c at 299.327 kb on - strand, within Rv0248c at 299.464 kb on - strand, within Rv0248c at 299.467 kb on + strand, within Rv0248c at 299.638 kb on + strand, within Rv0248c at 299.883 kb on - strand, within Rv0248c at 300.320 kb on - strand, within Rv0248c at 300.494 kb on - strand, within Rv0248c at 300.549 kb on - strand, within Rv0248c at 300.804 kb on - strand at 300.886 kb on + strand at 301.052 kb on - strand, within Rv0249c at 301.186 kb on + strand, within Rv0249c at 301.234 kb on + strand, within Rv0249c at 301.291 kb on + strand, within Rv0249c at 301.347 kb on + strand, within Rv0249c at 301.460 kb on - strand, within Rv0249c at 301.513 kb on + strand, within Rv0249c at 301.513 kb on + strand, within Rv0249c at 301.658 kb on - strand at 301.679 kb on + strand at 301.680 kb on - strand at 301.694 kb on + strand at 301.694 kb on + strand at 301.794 kb on - strand, within Rv0250c
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamine (C) remove 298,105 - -0.9 298,146 + +0.9 298,253 + Rv0247c 0.18 -1.5 299,230 - Rv0248c 0.19 +0.9 299,240 - Rv0248c 0.19 +0.1 299,327 - Rv0248c 0.24 -1.7 299,327 - Rv0248c 0.24 -1.5 299,464 - Rv0248c 0.31 -1.0 299,467 + Rv0248c 0.31 -1.0 299,638 + Rv0248c 0.40 -2.0 299,883 - Rv0248c 0.53 -0.8 300,320 - Rv0248c 0.75 -1.7 300,494 - Rv0248c 0.84 -1.9 300,549 - Rv0248c 0.87 +0.6 300,804 - -0.5 300,886 + -2.1 301,052 - Rv0249c 0.27 -0.6 301,186 + Rv0249c 0.43 -1.0 301,234 + Rv0249c 0.49 +0.3 301,291 + Rv0249c 0.56 -0.4 301,347 + Rv0249c 0.62 -0.7 301,460 - Rv0249c 0.76 -1.3 301,513 + Rv0249c 0.83 -1.0 301,513 + Rv0249c 0.83 +0.6 301,658 - -1.7 301,679 + -1.4 301,680 - +0.1 301,694 + -0.9 301,694 + -1.3 301,794 - Rv0250c 0.20 +0.8
Or see this region's nucleotide sequence