Experiment: L-Aspartic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0724A and Rv0725c overlap by 328 nucleotides Rv0725c and Rv0726c are separated by 92 nucleotides Rv0726c and Rv0727c are separated by 202 nucleotides Rv0727c and Rv0728c overlap by 4 nucleotides
Rv0724A: Rv0724A - Conserved hypothetical protein, at 817,531 to 817,866
Rv0724A
Rv0725c: Rv0725c - Conserved hypothetical protein, at 817,539 to 818,444
Rv0725c
Rv0726c: Rv0726c - Possible S-adenosylmethionine-dependent methyltransferase, at 818,537 to 819,640
Rv0726c
Rv0727c: Rv0727c - Possible L-fuculose phosphate aldolase FucA (L-fuculose-1-phosphate aldolase), at 819,843 to 820,499
Rv0727c
Rv0728c: Rv0728c - Possible D-3-phosphoglycerate dehydrogenase SerA2 (phosphoglycerate dehydrogenase) (PGDH), at 820,496 to 821,476
Rv0728c
Position (kb) 818
819
820 Strain fitness (log2 ratio) -1
0
1 at 817.622 kb on - strand at 817.700 kb on + strand at 817.701 kb on - strand at 817.880 kb on - strand, within Rv0725c at 817.975 kb on + strand, within Rv0725c at 818.171 kb on - strand, within Rv0725c at 818.256 kb on - strand, within Rv0725c at 818.453 kb on + strand at 818.453 kb on + strand at 818.686 kb on - strand, within Rv0726c at 818.686 kb on - strand, within Rv0726c at 818.721 kb on + strand, within Rv0726c at 818.721 kb on + strand, within Rv0726c at 818.722 kb on - strand, within Rv0726c at 818.832 kb on + strand, within Rv0726c at 818.833 kb on - strand, within Rv0726c at 818.862 kb on + strand, within Rv0726c at 818.970 kb on - strand, within Rv0726c at 819.055 kb on - strand, within Rv0726c at 819.633 kb on + strand at 819.633 kb on + strand at 819.633 kb on + strand at 819.633 kb on + strand at 819.633 kb on + strand at 819.633 kb on + strand at 819.633 kb on + strand at 819.633 kb on + strand at 819.634 kb on - strand at 819.634 kb on - strand at 819.634 kb on - strand at 819.634 kb on - strand at 819.634 kb on - strand at 819.634 kb on - strand at 819.634 kb on - strand at 819.634 kb on - strand at 819.680 kb on - strand at 819.680 kb on - strand at 819.752 kb on + strand at 819.792 kb on - strand at 819.792 kb on - strand at 819.844 kb on + strand at 819.872 kb on - strand at 820.102 kb on + strand, within Rv0727c at 820.132 kb on + strand, within Rv0727c at 820.257 kb on + strand, within Rv0727c at 820.257 kb on + strand, within Rv0727c at 820.257 kb on + strand, within Rv0727c at 820.257 kb on + strand, within Rv0727c at 820.258 kb on - strand, within Rv0727c at 820.263 kb on + strand, within Rv0727c at 820.264 kb on - strand, within Rv0727c at 820.323 kb on + strand, within Rv0727c at 820.323 kb on + strand, within Rv0727c at 820.323 kb on + strand, within Rv0727c at 820.323 kb on + strand, within Rv0727c at 820.355 kb on - strand, within Rv0727c at 820.508 kb on + strand at 820.508 kb on + strand at 820.509 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Aspartic Acid (C) remove 817,622 - +0.1 817,700 + -0.3 817,701 - +1.6 817,880 - Rv0725c 0.38 +0.1 817,975 + Rv0725c 0.48 -0.1 818,171 - Rv0725c 0.70 +0.0 818,256 - Rv0725c 0.79 -0.8 818,453 + -0.1 818,453 + -0.5 818,686 - Rv0726c 0.13 +0.7 818,686 - Rv0726c 0.13 -0.5 818,721 + Rv0726c 0.17 -0.2 818,721 + Rv0726c 0.17 +0.1 818,722 - Rv0726c 0.17 -0.8 818,832 + Rv0726c 0.27 -0.9 818,833 - Rv0726c 0.27 -0.6 818,862 + Rv0726c 0.29 -0.3 818,970 - Rv0726c 0.39 -0.1 819,055 - Rv0726c 0.47 +0.1 819,633 + +1.6 819,633 + -0.4 819,633 + +0.6 819,633 + +0.0 819,633 + +0.5 819,633 + -0.3 819,633 + -0.0 819,633 + +0.4 819,634 - +0.0 819,634 - -0.0 819,634 - -1.1 819,634 - -0.2 819,634 - +0.6 819,634 - -0.1 819,634 - +1.3 819,634 - +0.0 819,680 - -0.4 819,680 - -0.7 819,752 + +0.6 819,792 - -0.2 819,792 - -0.3 819,844 + -0.8 819,872 - -0.5 820,102 + Rv0727c 0.39 -0.2 820,132 + Rv0727c 0.44 +0.0 820,257 + Rv0727c 0.63 +0.6 820,257 + Rv0727c 0.63 +0.7 820,257 + Rv0727c 0.63 -0.1 820,257 + Rv0727c 0.63 +1.6 820,258 - Rv0727c 0.63 -0.1 820,263 + Rv0727c 0.64 -0.1 820,264 - Rv0727c 0.64 -0.6 820,323 + Rv0727c 0.73 -0.3 820,323 + Rv0727c 0.73 +0.2 820,323 + Rv0727c 0.73 -0.4 820,323 + Rv0727c 0.73 +0.4 820,355 - Rv0727c 0.78 -0.4 820,508 + +0.1 820,508 + -0.1 820,509 - -0.4
Or see this region's nucleotide sequence