Experiment: L-Aspartic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv1569 and Rv1570 overlap by 4 nucleotides Rv1570 and Rv1571 overlap by 1 nucleotides Rv1571 and Rv1572c are separated by 145 nucleotides Rv1572c and Rv1573 are separated by 15 nucleotides
Rv1569: Rv1569 - Probable 8-amino-7-oxononanoate synthase BioF1 (AONS) (8-amino-7-ketopelargonate synthase) (7-keto-8-amino-pelargonic acid synthetase) (7-KAP synthetase) (L-alanine--pimelyl CoA ligase), at 1,776,702 to 1,777,862
Rv1569
Rv1570: Rv1570 - Dethiobiotin synthetase BioD, at 1,777,859 to 1,778,539
Rv1570
Rv1571: Rv1571 - Conserved protein, at 1,778,539 to 1,779,048
Rv1571
Rv1572c: Rv1572c - Conserved hypothetical protein, at 1,779,194 to 1,779,298
Rv1572c
Rv1573: Rv1573 - Probable PhiRv1 phage protein, at 1,779,314 to 1,779,724
Rv1573
Position (kb) 1777
1778
1779 Strain fitness (log2 ratio) -2
-1
0
1 at 1777.029 kb on + strand, within Rv1569 at 1777.369 kb on + strand, within Rv1569 at 1777.370 kb on - strand, within Rv1569 at 1777.375 kb on + strand, within Rv1569 at 1777.760 kb on + strand at 1778.429 kb on - strand, within Rv1570 at 1778.429 kb on - strand, within Rv1570 at 1779.231 kb on - strand, within Rv1572c
Per-strain Table
Position Strand Gene LocusTag Fraction L-Aspartic Acid (C) remove 1,777,029 + Rv1569 0.28 -1.5 1,777,369 + Rv1569 0.57 -0.7 1,777,370 - Rv1569 0.58 -2.0 1,777,375 + Rv1569 0.58 -0.8 1,777,760 + -0.9 1,778,429 - Rv1570 0.84 -1.5 1,778,429 - Rv1570 0.84 -1.0 1,779,231 - Rv1572c 0.35 +1.2
Or see this region's nucleotide sequence