Experiment: L-Aspartic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0739 and Rv0740 are separated by 114 nucleotides Rv0740 and Rv0741 are separated by 230 nucleotides Rv0741 and Rv0742 are separated by 132 nucleotides
Rv0739: Rv0739 - Conserved hypothetical protein, at 830,855 to 831,661
Rv0739
Rv0740: Rv0740 - Conserved hypothetical protein, at 831,776 to 832,303
Rv0740
Rv0741: Rv0741 - Probable transposase (fragment), at 832,534 to 832,848
Rv0741
Rv0742: Rv0742 - PE-PGRS family protein PE_PGRS8, at 832,981 to 833,508
Rv0742
Position (kb) 831
832
833 Strain fitness (log2 ratio) -1
0
1
2
3 at 830.954 kb on + strand, within Rv0739 at 830.955 kb on - strand, within Rv0739 at 831.065 kb on - strand, within Rv0739 at 831.177 kb on - strand, within Rv0739 at 831.242 kb on + strand, within Rv0739 at 831.368 kb on + strand, within Rv0739 at 831.368 kb on + strand, within Rv0739 at 831.369 kb on - strand, within Rv0739 at 831.386 kb on + strand, within Rv0739 at 831.387 kb on - strand, within Rv0739 at 831.433 kb on + strand, within Rv0739 at 831.433 kb on + strand, within Rv0739 at 831.527 kb on + strand, within Rv0739 at 831.527 kb on + strand, within Rv0739 at 831.528 kb on - strand, within Rv0739 at 831.528 kb on - strand, within Rv0739 at 831.528 kb on - strand, within Rv0739 at 831.555 kb on + strand, within Rv0739 at 831.556 kb on - strand, within Rv0739 at 831.587 kb on + strand at 831.588 kb on - strand at 831.588 kb on - strand at 831.637 kb on + strand at 831.678 kb on + strand at 831.678 kb on + strand at 831.678 kb on + strand at 831.679 kb on - strand at 831.679 kb on - strand at 831.716 kb on + strand at 831.717 kb on - strand at 831.717 kb on - strand at 831.719 kb on - strand at 831.870 kb on - strand, within Rv0740 at 831.870 kb on - strand, within Rv0740 at 831.975 kb on + strand, within Rv0740 at 831.976 kb on - strand, within Rv0740 at 831.999 kb on - strand, within Rv0740 at 832.007 kb on - strand, within Rv0740 at 832.082 kb on + strand, within Rv0740 at 832.083 kb on - strand, within Rv0740 at 832.341 kb on + strand at 832.397 kb on + strand at 832.397 kb on + strand at 832.397 kb on + strand at 832.413 kb on + strand at 832.418 kb on + strand at 832.418 kb on + strand at 832.418 kb on + strand at 832.419 kb on - strand at 832.419 kb on - strand at 832.419 kb on - strand at 832.419 kb on - strand at 832.683 kb on - strand, within Rv0741 at 832.683 kb on - strand, within Rv0741 at 832.683 kb on - strand, within Rv0741 at 832.846 kb on + strand at 832.847 kb on - strand at 832.950 kb on + strand at 832.983 kb on - strand at 833.200 kb on - strand, within Rv0742 at 833.239 kb on + strand, within Rv0742 at 833.239 kb on + strand, within Rv0742 at 833.240 kb on - strand, within Rv0742
Per-strain Table
Position Strand Gene LocusTag Fraction L-Aspartic Acid (C) remove 830,954 + Rv0739 0.12 -0.1 830,955 - Rv0739 0.12 -0.4 831,065 - Rv0739 0.26 +0.1 831,177 - Rv0739 0.40 -0.4 831,242 + Rv0739 0.48 -0.1 831,368 + Rv0739 0.64 -0.0 831,368 + Rv0739 0.64 -0.1 831,369 - Rv0739 0.64 -0.7 831,386 + Rv0739 0.66 +3.2 831,387 - Rv0739 0.66 -0.5 831,433 + Rv0739 0.72 -0.5 831,433 + Rv0739 0.72 -0.1 831,527 + Rv0739 0.83 -0.7 831,527 + Rv0739 0.83 -0.3 831,528 - Rv0739 0.83 +0.3 831,528 - Rv0739 0.83 +0.0 831,528 - Rv0739 0.83 +0.1 831,555 + Rv0739 0.87 -0.2 831,556 - Rv0739 0.87 -0.6 831,587 + +0.5 831,588 - +0.0 831,588 - -0.0 831,637 + -0.8 831,678 + +0.6 831,678 + +1.2 831,678 + -0.9 831,679 - -0.2 831,679 - -0.2 831,716 + -0.7 831,717 - -0.6 831,717 - -0.5 831,719 - -0.3 831,870 - Rv0740 0.18 +0.3 831,870 - Rv0740 0.18 -1.2 831,975 + Rv0740 0.38 -1.5 831,976 - Rv0740 0.38 -1.6 831,999 - Rv0740 0.42 -1.2 832,007 - Rv0740 0.44 -0.4 832,082 + Rv0740 0.58 +0.6 832,083 - Rv0740 0.58 +0.5 832,341 + +1.6 832,397 + -0.1 832,397 + +0.5 832,397 + -0.0 832,413 + -0.5 832,418 + +0.1 832,418 + +0.2 832,418 + +0.5 832,419 - -0.4 832,419 - -0.5 832,419 - +0.3 832,419 - -0.2 832,683 - Rv0741 0.47 -0.6 832,683 - Rv0741 0.47 -0.7 832,683 - Rv0741 0.47 +0.3 832,846 + +0.6 832,847 - +1.6 832,950 + +0.6 832,983 - -0.3 833,200 - Rv0742 0.41 +0.2 833,239 + Rv0742 0.49 -0.5 833,239 + Rv0742 0.49 +0.6 833,240 - Rv0742 0.49 +0.1
Or see this region's nucleotide sequence