Experiment: L-Aspartic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0690c and Rv0691c overlap by 4 nucleotides Rv0691c and Rv0691A overlap by 9 nucleotides Rv0691A and Rv0692 overlap by 16 nucleotides Rv0692 and Rv0693 overlap by 4 nucleotides
Rv0690c: Rv0690c - Conserved hypothetical protein, at 790,024 to 791,073
Rv0690c
Rv0691c: Rv0691c - Probable transcriptional regulatory protein, at 791,070 to 791,666
Rv0691c
Rv0691A: Rv0691A - Mycofactocin precursor protein, at 791,658 to 791,846
Rv0691A
Rv0692: Rv0692 - Conserved hypothetical protein, at 791,831 to 792,160
Rv0692
Rv0693: Rv0693 - Probable coenzyme PQQ synthesis protein E PqqE (coenzyme PQQ synthesis protein III), at 792,157 to 793,332
Rv0693
Position (kb) 791
792
793 Strain fitness (log2 ratio) -1
0
1 at 790.998 kb on - strand at 790.998 kb on - strand at 791.167 kb on + strand, within Rv0691c at 791.284 kb on + strand, within Rv0691c at 791.284 kb on + strand, within Rv0691c at 791.284 kb on + strand, within Rv0691c at 791.285 kb on - strand, within Rv0691c at 791.285 kb on - strand, within Rv0691c at 791.299 kb on + strand, within Rv0691c at 791.841 kb on + strand at 791.917 kb on - strand, within Rv0692 at 791.980 kb on + strand, within Rv0692 at 791.980 kb on + strand, within Rv0692 at 791.981 kb on - strand, within Rv0692 at 792.099 kb on - strand, within Rv0692 at 792.222 kb on + strand at 792.222 kb on + strand at 792.222 kb on + strand at 792.223 kb on - strand at 792.238 kb on + strand at 792.252 kb on - strand at 792.358 kb on + strand, within Rv0693 at 792.419 kb on - strand, within Rv0693 at 792.761 kb on + strand, within Rv0693 at 792.955 kb on + strand, within Rv0693 at 793.103 kb on - strand, within Rv0693
Per-strain Table
Position Strand Gene LocusTag Fraction L-Aspartic Acid (C) remove 790,998 - -0.2 790,998 - +0.9 791,167 + Rv0691c 0.16 -0.3 791,284 + Rv0691c 0.36 -1.2 791,284 + Rv0691c 0.36 -0.8 791,284 + Rv0691c 0.36 -0.6 791,285 - Rv0691c 0.36 -1.0 791,285 - Rv0691c 0.36 +0.0 791,299 + Rv0691c 0.38 -0.5 791,841 + -0.7 791,917 - Rv0692 0.26 -0.5 791,980 + Rv0692 0.45 -1.1 791,980 + Rv0692 0.45 +1.6 791,981 - Rv0692 0.45 -0.8 792,099 - Rv0692 0.81 -1.0 792,222 + -0.3 792,222 + -0.9 792,222 + -0.2 792,223 - -0.6 792,238 + -0.6 792,252 - -0.2 792,358 + Rv0693 0.17 -0.4 792,419 - Rv0693 0.22 -1.1 792,761 + Rv0693 0.51 +0.9 792,955 + Rv0693 0.68 +0.4 793,103 - Rv0693 0.80 -0.1
Or see this region's nucleotide sequence