Experiment: L-Aspartic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0562 and Rv0563 are separated by 100 nucleotides Rv0563 and Rv0564c are separated by 184 nucleotides
Rv0562: Rv0562 - Probable polyprenyl-diphosphate synthase GrcC1 (polyprenyl pyrophosphate synthetase), at 652,771 to 653,778
Rv0562
Rv0563: Rv0563 - Probable protease transmembrane protein heat shock protein HtpX, at 653,879 to 654,739
Rv0563
Rv0564c: Rv0564c - Probable glycerol-3-phosphate dehydrogenase [NAD(P)+] GpdA1 (NAD(P)H-dependent glycerol-3-phosphate dehydrogenase) (NAD(P)H-dependent dihydroxyacetone-phosphate reductase), at 654,924 to 655,949
Rv0564c
Position (kb) 653
654
655 Strain fitness (log2 ratio) -2
-1
0
1 at 653.840 kb on - strand at 653.862 kb on + strand at 654.021 kb on - strand, within Rv0563 at 654.155 kb on + strand, within Rv0563 at 654.468 kb on + strand, within Rv0563 at 654.740 kb on + strand at 654.740 kb on + strand at 654.741 kb on - strand at 654.876 kb on - strand at 654.876 kb on - strand at 654.926 kb on - strand at 654.977 kb on + strand at 654.978 kb on - strand at 654.978 kb on - strand at 654.978 kb on - strand at 654.979 kb on + strand at 654.979 kb on + strand at 655.592 kb on + strand, within Rv0564c at 655.593 kb on - strand, within Rv0564c
Per-strain Table
Position Strand Gene LocusTag Fraction L-Aspartic Acid (C) remove 653,840 - -0.1 653,862 + +0.7 654,021 - Rv0563 0.16 -2.7 654,155 + Rv0563 0.32 -1.7 654,468 + Rv0563 0.68 -0.6 654,740 + -1.3 654,740 + +1.7 654,741 - -0.2 654,876 - -0.0 654,876 - -1.3 654,926 - +0.1 654,977 + -0.5 654,978 - -0.3 654,978 - -0.6 654,978 - -0.2 654,979 + -0.1 654,979 + -0.4 655,592 + Rv0564c 0.65 -0.5 655,593 - Rv0564c 0.65 +1.7
Or see this region's nucleotide sequence