Experiment: L-Aspartic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0359 and Rv0360c are separated by 4 nucleotides Rv0360c and Rv0361 are separated by 82 nucleotides Rv0361 and Rv0362 are separated by 221 nucleotides
Rv0359: Rv0359 - Probable conserved integral membrane protein, at 437,518 to 438,297
Rv0359
Rv0360c: Rv0360c - Conserved protein, at 438,302 to 438,739
Rv0360c
Rv0361: Rv0361 - Probable conserved membrane protein, at 438,822 to 439,649
Rv0361
Rv0362: Rv0362 - Possible Mg2+ transport transmembrane protein MgtE, at 439,871 to 441,253
Rv0362
Position (kb) 438
439
440 Strain fitness (log2 ratio) -2
-1
0
1 at 437.863 kb on + strand, within Rv0359 at 437.863 kb on + strand, within Rv0359 at 437.863 kb on + strand, within Rv0359 at 437.864 kb on - strand, within Rv0359 at 437.864 kb on - strand, within Rv0359 at 437.864 kb on - strand, within Rv0359 at 437.864 kb on - strand, within Rv0359 at 437.864 kb on - strand, within Rv0359 at 438.018 kb on - strand, within Rv0359 at 438.018 kb on - strand, within Rv0359 at 438.018 kb on - strand, within Rv0359 at 438.048 kb on - strand, within Rv0359 at 438.048 kb on - strand, within Rv0359 at 438.211 kb on + strand, within Rv0359 at 438.212 kb on - strand, within Rv0359 at 438.285 kb on + strand at 438.285 kb on + strand at 438.366 kb on + strand, within Rv0360c at 438.367 kb on - strand, within Rv0360c at 438.367 kb on - strand, within Rv0360c at 438.423 kb on - strand, within Rv0360c at 438.525 kb on + strand, within Rv0360c at 438.525 kb on + strand, within Rv0360c at 438.532 kb on - strand, within Rv0360c at 438.778 kb on + strand at 438.778 kb on + strand at 439.423 kb on - strand, within Rv0361 at 439.423 kb on - strand, within Rv0361 at 439.432 kb on - strand, within Rv0361 at 439.696 kb on + strand at 439.696 kb on + strand at 439.800 kb on - strand at 439.833 kb on - strand at 440.064 kb on + strand, within Rv0362 at 440.064 kb on + strand, within Rv0362 at 440.065 kb on - strand, within Rv0362 at 440.396 kb on + strand, within Rv0362 at 440.397 kb on - strand, within Rv0362 at 440.402 kb on + strand, within Rv0362 at 440.402 kb on + strand, within Rv0362 at 440.402 kb on + strand, within Rv0362 at 440.605 kb on - strand, within Rv0362
Per-strain Table
Position Strand Gene LocusTag Fraction L-Aspartic Acid (C) remove 437,863 + Rv0359 0.44 -0.2 437,863 + Rv0359 0.44 -0.1 437,863 + Rv0359 0.44 +0.9 437,864 - Rv0359 0.44 +0.2 437,864 - Rv0359 0.44 +0.2 437,864 - Rv0359 0.44 +0.7 437,864 - Rv0359 0.44 -1.1 437,864 - Rv0359 0.44 -0.1 438,018 - Rv0359 0.64 +0.3 438,018 - Rv0359 0.64 -0.2 438,018 - Rv0359 0.64 -0.3 438,048 - Rv0359 0.68 -0.3 438,048 - Rv0359 0.68 -0.2 438,211 + Rv0359 0.89 +0.4 438,212 - Rv0359 0.89 -0.2 438,285 + +0.2 438,285 + -0.2 438,366 + Rv0360c 0.15 +0.5 438,367 - Rv0360c 0.15 -0.6 438,367 - Rv0360c 0.15 +0.5 438,423 - Rv0360c 0.28 +1.1 438,525 + Rv0360c 0.51 +0.3 438,525 + Rv0360c 0.51 +1.2 438,532 - Rv0360c 0.53 +0.2 438,778 + -0.3 438,778 + -1.1 439,423 - Rv0361 0.73 -0.4 439,423 - Rv0361 0.73 -1.3 439,432 - Rv0361 0.74 -2.7 439,696 + -0.8 439,696 + -1.2 439,800 - +0.8 439,833 - +0.0 440,064 + Rv0362 0.14 +0.1 440,064 + Rv0362 0.14 +1.2 440,065 - Rv0362 0.14 -0.3 440,396 + Rv0362 0.38 -0.7 440,397 - Rv0362 0.38 -0.2 440,402 + Rv0362 0.38 -0.2 440,402 + Rv0362 0.38 +1.2 440,402 + Rv0362 0.38 +0.2 440,605 - Rv0362 0.53 -0.2
Or see this region's nucleotide sequence