Experiment: L-Aspartic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0198c and Rv0199 are separated by 42 nucleotides Rv0199 and Rv0200 overlap by 4 nucleotides Rv0200 and Rv0201c overlap by 4 nucleotides Rv0201c and Rv0202c overlap by 4 nucleotides
Rv0198c: Rv0198c - Probable zinc metalloprotease Zmp1, at 234,516 to 236,507
Rv0198c
Rv0199: Rv0199 - Probable conserved membrane protein, at 236,550 to 237,209
Rv0199
Rv0200: Rv0200 - Possible conserved transmembrane protein, at 237,206 to 237,895
Rv0200
Rv0201c: Rv0201c - Conserved protein, at 237,892 to 238,395
Rv0201c
Rv0202c: Rv0202c - Probable conserved transmembrane transport protein MmpL11, at 238,392 to 241,292
Rv0202c
Position (kb) 237
238 Strain fitness (log2 ratio) -2
-1
0
1 at 236.394 kb on + strand at 236.394 kb on + strand at 236.674 kb on - strand, within Rv0199 at 236.693 kb on - strand, within Rv0199 at 236.772 kb on - strand, within Rv0199 at 236.775 kb on + strand, within Rv0199 at 236.775 kb on + strand, within Rv0199 at 236.988 kb on - strand, within Rv0199 at 237.659 kb on + strand, within Rv0200 at 237.659 kb on + strand, within Rv0200 at 237.659 kb on + strand, within Rv0200 at 238.123 kb on - strand, within Rv0201c at 238.243 kb on + strand, within Rv0201c at 238.300 kb on - strand, within Rv0201c at 238.573 kb on + strand at 238.623 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Aspartic Acid (C) remove 236,394 + +0.7 236,394 + +0.1 236,674 - Rv0199 0.19 +0.3 236,693 - Rv0199 0.22 +0.3 236,772 - Rv0199 0.34 -0.5 236,775 + Rv0199 0.34 -0.2 236,775 + Rv0199 0.34 +1.1 236,988 - Rv0199 0.66 +1.1 237,659 + Rv0200 0.66 -0.8 237,659 + Rv0200 0.66 -0.2 237,659 + Rv0200 0.66 +0.8 238,123 - Rv0201c 0.46 -1.9 238,243 + Rv0201c 0.70 -2.5 238,300 - Rv0201c 0.81 -1.1 238,573 + +0.3 238,623 - -1.1
Or see this region's nucleotide sequence