Experiment: L-Aspartic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0160c and Rv0161 are separated by 167 nucleotides Rv0161 and Rv0162c are separated by 27 nucleotides
Rv0160c: Rv0160c - PE family protein PE4, at 188,931 to 190,439
Rv0160c
Rv0161: Rv0161 - Possible oxidoreductase, at 190,607 to 191,956
Rv0161
Rv0162c: Rv0162c - Probable zinc-type alcohol dehydrogenase (E subunit) AdhE1, at 191,984 to 193,135
Rv0162c
Position (kb) 190
191
192 Strain fitness (log2 ratio) -2
-1
0
1 at 189.617 kb on - strand, within Rv0160c at 189.617 kb on - strand, within Rv0160c at 189.686 kb on + strand, within Rv0160c at 189.731 kb on - strand, within Rv0160c at 189.731 kb on - strand, within Rv0160c at 190.128 kb on - strand, within Rv0160c at 190.128 kb on - strand, within Rv0160c at 190.128 kb on - strand, within Rv0160c at 190.128 kb on - strand, within Rv0160c at 190.181 kb on - strand, within Rv0160c at 190.328 kb on + strand at 190.328 kb on + strand at 190.328 kb on + strand at 190.329 kb on - strand at 190.329 kb on - strand at 190.506 kb on - strand at 190.509 kb on - strand at 190.509 kb on - strand at 190.512 kb on + strand at 190.512 kb on + strand at 190.513 kb on - strand at 190.516 kb on + strand at 190.516 kb on + strand at 190.526 kb on - strand at 190.526 kb on - strand at 190.543 kb on - strand at 190.582 kb on + strand at 190.594 kb on + strand at 190.594 kb on + strand at 190.595 kb on - strand at 190.597 kb on - strand at 190.611 kb on + strand at 190.787 kb on + strand, within Rv0161 at 190.788 kb on - strand, within Rv0161 at 191.367 kb on + strand, within Rv0161 at 191.576 kb on + strand, within Rv0161 at 191.853 kb on - strand at 191.932 kb on + strand at 191.933 kb on - strand at 191.985 kb on + strand at 192.058 kb on + strand at 192.168 kb on + strand, within Rv0162c at 192.373 kb on - strand, within Rv0162c at 192.373 kb on - strand, within Rv0162c at 192.454 kb on - strand, within Rv0162c at 192.454 kb on - strand, within Rv0162c at 192.582 kb on - strand, within Rv0162c at 192.682 kb on - strand, within Rv0162c at 192.682 kb on - strand, within Rv0162c at 192.682 kb on - strand, within Rv0162c
Per-strain Table
Position Strand Gene LocusTag Fraction L-Aspartic Acid (C) remove 189,617 - Rv0160c 0.45 -0.2 189,617 - Rv0160c 0.45 -0.2 189,686 + Rv0160c 0.50 -0.6 189,731 - Rv0160c 0.53 +0.7 189,731 - Rv0160c 0.53 -0.1 190,128 - Rv0160c 0.79 -0.2 190,128 - Rv0160c 0.79 -0.1 190,128 - Rv0160c 0.79 -0.0 190,128 - Rv0160c 0.79 +0.0 190,181 - Rv0160c 0.83 -0.1 190,328 + -0.7 190,328 + -0.6 190,328 + -0.3 190,329 - +0.3 190,329 - -0.9 190,506 - -0.5 190,509 - +0.5 190,509 - -0.2 190,512 + +1.7 190,512 + +1.1 190,513 - -0.2 190,516 + -0.2 190,516 + +1.6 190,526 - -0.2 190,526 - +0.0 190,543 - -0.2 190,582 + -0.8 190,594 + +0.2 190,594 + +0.9 190,595 - -0.2 190,597 - +1.7 190,611 + -0.2 190,787 + Rv0161 0.13 -0.4 190,788 - Rv0161 0.13 -0.7 191,367 + Rv0161 0.56 -0.6 191,576 + Rv0161 0.72 -1.3 191,853 - -1.0 191,932 + -0.7 191,933 - -2.3 191,985 + +0.7 192,058 + +0.1 192,168 + Rv0162c 0.16 -0.6 192,373 - Rv0162c 0.34 +0.2 192,373 - Rv0162c 0.34 -0.5 192,454 - Rv0162c 0.41 +0.5 192,454 - Rv0162c 0.41 +0.1 192,582 - Rv0162c 0.52 +0.3 192,682 - Rv0162c 0.61 -0.2 192,682 - Rv0162c 0.61 +1.0 192,682 - Rv0162c 0.61 -1.0
Or see this region's nucleotide sequence