Experiment: Lactate-Sulfite (30-20 mM) minimal (MoLS3)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU0608 and DVU0609 are separated by 155 nucleotides DVU0609 and DVU0610 overlap by 4 nucleotides DVU0610 and DVU0611 are separated by 24 nucleotides
DVU0608: DVU0608 - methyl-accepting chemotaxis protein (TIGR), at 676,751 to 678,784
DVU0608
DVU0609: DVU0609 - lipoprotein, putative (TIGR), at 678,940 to 679,575
DVU0609
DVU0610: DVU0610 - conserved hypothetical protein (TIGR), at 679,572 to 680,492
DVU0610
DVU0611: DVU0611 - ABC transporter, ATP-binding protein (TIGR), at 680,517 to 681,344
DVU0611
Position (kb) 678
679
680 Strain fitness (log2 ratio) -2
-1
0
1
2 at 677.940 kb on - strand, within DVU0608 at 677.945 kb on - strand, within DVU0608 at 677.962 kb on + strand, within DVU0608 at 677.986 kb on - strand, within DVU0608 at 677.993 kb on - strand, within DVU0608 at 678.021 kb on + strand, within DVU0608 at 678.029 kb on - strand, within DVU0608 at 678.062 kb on - strand, within DVU0608 at 678.096 kb on + strand, within DVU0608 at 678.096 kb on + strand, within DVU0608 at 678.101 kb on + strand, within DVU0608 at 678.104 kb on - strand, within DVU0608 at 678.104 kb on - strand, within DVU0608 at 678.182 kb on + strand, within DVU0608 at 678.250 kb on - strand, within DVU0608 at 678.450 kb on + strand, within DVU0608 at 678.485 kb on - strand, within DVU0608 at 678.485 kb on - strand, within DVU0608 at 678.485 kb on - strand, within DVU0608 at 678.487 kb on - strand, within DVU0608 at 678.505 kb on - strand, within DVU0608 at 678.546 kb on + strand, within DVU0608 at 678.554 kb on - strand, within DVU0608 at 678.602 kb on + strand at 678.612 kb on + strand at 678.624 kb on + strand at 678.695 kb on + strand at 678.703 kb on - strand at 678.821 kb on + strand at 678.992 kb on + strand at 679.024 kb on - strand, within DVU0609 at 679.206 kb on - strand, within DVU0609 at 679.384 kb on - strand, within DVU0609 at 679.443 kb on + strand, within DVU0609 at 679.491 kb on + strand, within DVU0609 at 679.658 kb on - strand at 679.700 kb on + strand, within DVU0610 at 679.717 kb on - strand, within DVU0610 at 679.763 kb on - strand, within DVU0610 at 679.763 kb on - strand, within DVU0610 at 679.782 kb on - strand, within DVU0610 at 679.782 kb on - strand, within DVU0610 at 679.904 kb on - strand, within DVU0610 at 679.956 kb on - strand, within DVU0610 at 679.981 kb on + strand, within DVU0610 at 679.981 kb on + strand, within DVU0610 at 679.981 kb on + strand, within DVU0610 at 679.981 kb on + strand, within DVU0610 at 679.989 kb on - strand, within DVU0610 at 679.989 kb on - strand, within DVU0610 at 679.993 kb on + strand, within DVU0610 at 680.091 kb on + strand, within DVU0610 at 680.099 kb on - strand, within DVU0610 at 680.244 kb on + strand, within DVU0610 at 680.377 kb on - strand, within DVU0610 at 680.537 kb on + strand at 680.553 kb on + strand at 680.553 kb on + strand at 680.553 kb on + strand at 680.561 kb on - strand at 680.561 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Lactate-Sulfite (30-20 mM) minimal (MoLS3) remove 677,940 - DVU0608 0.58 +0.1 677,945 - DVU0608 0.59 +0.7 677,962 + DVU0608 0.60 -0.5 677,986 - DVU0608 0.61 +0.1 677,993 - DVU0608 0.61 -1.2 678,021 + DVU0608 0.62 +0.6 678,029 - DVU0608 0.63 +0.7 678,062 - DVU0608 0.64 -0.2 678,096 + DVU0608 0.66 +0.8 678,096 + DVU0608 0.66 -1.1 678,101 + DVU0608 0.66 -0.6 678,104 - DVU0608 0.67 -0.9 678,104 - DVU0608 0.67 -0.3 678,182 + DVU0608 0.70 -0.5 678,250 - DVU0608 0.74 +0.8 678,450 + DVU0608 0.84 -2.2 678,485 - DVU0608 0.85 -0.6 678,485 - DVU0608 0.85 +0.3 678,485 - DVU0608 0.85 -0.2 678,487 - DVU0608 0.85 -0.1 678,505 - DVU0608 0.86 -1.0 678,546 + DVU0608 0.88 +0.8 678,554 - DVU0608 0.89 -0.7 678,602 + +0.4 678,612 + +0.1 678,624 + +0.7 678,695 + -1.4 678,703 - +0.2 678,821 + -0.1 678,992 + -0.0 679,024 - DVU0609 0.13 -2.1 679,206 - DVU0609 0.42 -0.4 679,384 - DVU0609 0.70 -0.7 679,443 + DVU0609 0.79 -0.6 679,491 + DVU0609 0.87 -0.3 679,658 - +0.6 679,700 + DVU0610 0.14 -0.1 679,717 - DVU0610 0.16 +0.6 679,763 - DVU0610 0.21 -0.2 679,763 - DVU0610 0.21 +2.6 679,782 - DVU0610 0.23 -0.4 679,782 - DVU0610 0.23 -0.7 679,904 - DVU0610 0.36 -0.3 679,956 - DVU0610 0.42 -0.2 679,981 + DVU0610 0.44 +0.0 679,981 + DVU0610 0.44 -1.0 679,981 + DVU0610 0.44 +1.0 679,981 + DVU0610 0.44 -0.2 679,989 - DVU0610 0.45 +0.4 679,989 - DVU0610 0.45 -0.7 679,993 + DVU0610 0.46 +0.0 680,091 + DVU0610 0.56 -0.4 680,099 - DVU0610 0.57 +0.0 680,244 + DVU0610 0.73 +0.1 680,377 - DVU0610 0.87 -0.3 680,537 + +0.7 680,553 + -0.4 680,553 + -0.0 680,553 + +0.6 680,561 - -1.9 680,561 - +0.2
Or see this region's nucleotide sequence