Experiment: Lactate-Sulfite (30-20 mM) minimal (MoLS3)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt isf-1 and DVU0821 are separated by 403 nucleotides DVU0821 and DVU0822 are separated by 11 nucleotides DVU0822 and tRNA-Ser are separated by 155 nucleotides
DVU0819: isf-1 - FMN reductase, NADPH-dependent (TIGR), at 908,890 to 909,507
isf-1
DVU0821: DVU0821 - conserved hypothetical protein (TIGR), at 909,911 to 910,510
DVU0821
DVU0822: DVU0822 - hypothetical protein (TIGR), at 910,522 to 911,178
DVU0822
DVU_tRNA-Ser-3: tRNA-Ser - tRNA with anticodon GCT for Ser (VIMSS-AUTO), at 911,334 to 911,428
tRNA-Ser
Position (kb) 909
910
911 Strain fitness (log2 ratio) -2
-1
0
1 at 908.945 kb on + strand at 908.947 kb on - strand at 908.966 kb on + strand, within isf-1 at 909.033 kb on - strand, within isf-1 at 909.103 kb on + strand, within isf-1 at 909.215 kb on + strand, within isf-1 at 909.215 kb on + strand, within isf-1 at 909.223 kb on - strand, within isf-1 at 909.312 kb on - strand, within isf-1 at 909.378 kb on - strand, within isf-1 at 909.530 kb on - strand at 909.569 kb on + strand at 909.623 kb on - strand at 909.701 kb on + strand at 909.723 kb on + strand at 909.731 kb on - strand at 909.731 kb on - strand at 909.800 kb on - strand at 909.859 kb on - strand at 909.939 kb on + strand at 909.942 kb on - strand at 909.947 kb on - strand at 910.143 kb on + strand, within DVU0821 at 910.151 kb on - strand, within DVU0821 at 910.187 kb on - strand, within DVU0821 at 910.619 kb on + strand, within DVU0822 at 910.878 kb on + strand, within DVU0822 at 910.971 kb on - strand, within DVU0822
Per-strain Table
Position Strand Gene LocusTag Fraction Lactate-Sulfite (30-20 mM) minimal (MoLS3) remove 908,945 + +1.5 908,947 - +1.5 908,966 + isf-1 DVU0819 0.12 -0.2 909,033 - isf-1 DVU0819 0.23 -0.1 909,103 + isf-1 DVU0819 0.34 -0.3 909,215 + isf-1 DVU0819 0.53 -1.6 909,215 + isf-1 DVU0819 0.53 -0.5 909,223 - isf-1 DVU0819 0.54 +0.8 909,312 - isf-1 DVU0819 0.68 +0.0 909,378 - isf-1 DVU0819 0.79 -0.5 909,530 - +0.4 909,569 + +0.0 909,623 - +0.7 909,701 + +0.3 909,723 + +0.2 909,731 - -0.1 909,731 - -0.3 909,800 - -0.1 909,859 - -0.3 909,939 + -0.3 909,942 - -0.6 909,947 - -0.7 910,143 + DVU0821 0.39 -1.2 910,151 - DVU0821 0.40 -0.6 910,187 - DVU0821 0.46 -0.4 910,619 + DVU0822 0.15 +1.0 910,878 + DVU0822 0.54 -0.2 910,971 - DVU0822 0.68 -1.8
Or see this region's nucleotide sequence