Experiment: L-Asparagine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv3150 and Rv3151 overlap by 4 nucleotides Rv3151 and Rv3152 are separated by 115 nucleotides
Rv3150: Rv3150 - Probable NADH dehydrogenase I (chain F) NuoF (NADH-ubiquinone oxidoreductase chain F), at 3,515,412 to 3,516,749
Rv3150
Rv3151: Rv3151 - Probable NADH dehydrogenase I (chain G) NuoG (NADH-ubiquinone oxidoreductase chain G), at 3,516,746 to 3,519,166
Rv3151
Rv3152: Rv3152 - Probable NADH dehydrogenase I (chain H) NuoH (NADH-ubiquinone oxidoreductase chain H), at 3,519,282 to 3,520,514
Rv3152
Position (kb)
3516
3517
3518
3519
3520 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3515.871 kb on + strand, within Rv3150 at 3515.952 kb on + strand, within Rv3150 at 3516.168 kb on + strand, within Rv3150 at 3516.168 kb on + strand, within Rv3150 at 3516.224 kb on + strand, within Rv3150 at 3516.453 kb on + strand, within Rv3150 at 3516.512 kb on + strand, within Rv3150 at 3516.519 kb on + strand, within Rv3150 at 3516.520 kb on - strand, within Rv3150 at 3517.596 kb on - strand, within Rv3151 at 3518.018 kb on + strand, within Rv3151 at 3518.555 kb on - strand, within Rv3151 at 3518.555 kb on - strand, within Rv3151 at 3518.644 kb on + strand, within Rv3151 at 3518.921 kb on + strand, within Rv3151 at 3518.921 kb on + strand, within Rv3151 at 3518.922 kb on - strand, within Rv3151 at 3518.922 kb on - strand, within Rv3151 at 3518.952 kb on + strand at 3519.247 kb on + strand at 3519.247 kb on + strand at 3519.247 kb on + strand at 3519.628 kb on + strand, within Rv3152 at 3519.682 kb on + strand, within Rv3152 at 3519.685 kb on - strand, within Rv3152 at 3519.769 kb on - strand, within Rv3152 at 3519.897 kb on + strand, within Rv3152 at 3519.898 kb on - strand, within Rv3152 at 3519.898 kb on - strand, within Rv3152 at 3519.898 kb on - strand, within Rv3152 at 3519.906 kb on + strand, within Rv3152 at 3520.026 kb on + strand, within Rv3152 at 3520.035 kb on - strand, within Rv3152 at 3520.040 kb on + strand, within Rv3152 at 3520.065 kb on + strand, within Rv3152 at 3520.066 kb on + strand, within Rv3152
Per-strain Table
Position Strand Gene LocusTag Fraction L-Asparagine (C) remove 3,515,871 + Rv3150 0.34 -1.3 3,515,952 + Rv3150 0.40 -0.7 3,516,168 + Rv3150 0.57 -1.6 3,516,168 + Rv3150 0.57 -3.3 3,516,224 + Rv3150 0.61 -1.4 3,516,453 + Rv3150 0.78 -1.6 3,516,512 + Rv3150 0.82 -1.8 3,516,519 + Rv3150 0.83 +0.1 3,516,520 - Rv3150 0.83 -2.0 3,517,596 - Rv3151 0.35 -1.2 3,518,018 + Rv3151 0.53 -1.6 3,518,555 - Rv3151 0.75 -1.5 3,518,555 - Rv3151 0.75 -1.4 3,518,644 + Rv3151 0.78 -2.3 3,518,921 + Rv3151 0.90 -1.1 3,518,921 + Rv3151 0.90 -0.9 3,518,922 - Rv3151 0.90 -1.6 3,518,922 - Rv3151 0.90 -0.8 3,518,952 + -1.2 3,519,247 + +0.3 3,519,247 + -0.5 3,519,247 + +0.2 3,519,628 + Rv3152 0.28 -0.4 3,519,682 + Rv3152 0.32 -0.9 3,519,685 - Rv3152 0.33 -1.5 3,519,769 - Rv3152 0.39 -1.0 3,519,897 + Rv3152 0.50 -1.7 3,519,898 - Rv3152 0.50 -1.1 3,519,898 - Rv3152 0.50 -0.0 3,519,898 - Rv3152 0.50 -2.0 3,519,906 + Rv3152 0.51 -2.4 3,520,026 + Rv3152 0.60 -1.2 3,520,035 - Rv3152 0.61 -1.2 3,520,040 + Rv3152 0.61 +0.1 3,520,065 + Rv3152 0.64 -1.4 3,520,066 + Rv3152 0.64 -1.5
Or see this region's nucleotide sequence