Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv3151

Experiment: L-Asparagine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRv3150 and Rv3151 overlap by 4 nucleotidesRv3151 and Rv3152 are separated by 115 nucleotides Rv3150: Rv3150 - Probable NADH dehydrogenase I (chain F) NuoF (NADH-ubiquinone oxidoreductase chain F), at 3,515,412 to 3,516,749 Rv3150 Rv3151: Rv3151 - Probable NADH dehydrogenase I (chain G) NuoG (NADH-ubiquinone oxidoreductase chain G), at 3,516,746 to 3,519,166 Rv3151 Rv3152: Rv3152 - Probable NADH dehydrogenase I (chain H) NuoH (NADH-ubiquinone oxidoreductase chain H), at 3,519,282 to 3,520,514 Rv3152 Position (kb) 3516 3517 3518 3519 3520Strain fitness (log2 ratio) -3 -2 -1 0 1at 3515.871 kb on + strand, within Rv3150at 3515.952 kb on + strand, within Rv3150at 3516.168 kb on + strand, within Rv3150at 3516.168 kb on + strand, within Rv3150at 3516.224 kb on + strand, within Rv3150at 3516.453 kb on + strand, within Rv3150at 3516.512 kb on + strand, within Rv3150at 3516.519 kb on + strand, within Rv3150at 3516.520 kb on - strand, within Rv3150at 3517.596 kb on - strand, within Rv3151at 3518.018 kb on + strand, within Rv3151at 3518.555 kb on - strand, within Rv3151at 3518.555 kb on - strand, within Rv3151at 3518.644 kb on + strand, within Rv3151at 3518.921 kb on + strand, within Rv3151at 3518.921 kb on + strand, within Rv3151at 3518.922 kb on - strand, within Rv3151at 3518.922 kb on - strand, within Rv3151at 3518.952 kb on + strandat 3519.247 kb on + strandat 3519.247 kb on + strandat 3519.247 kb on + strandat 3519.628 kb on + strand, within Rv3152at 3519.682 kb on + strand, within Rv3152at 3519.685 kb on - strand, within Rv3152at 3519.769 kb on - strand, within Rv3152at 3519.897 kb on + strand, within Rv3152at 3519.898 kb on - strand, within Rv3152at 3519.898 kb on - strand, within Rv3152at 3519.898 kb on - strand, within Rv3152at 3519.906 kb on + strand, within Rv3152at 3520.026 kb on + strand, within Rv3152at 3520.035 kb on - strand, within Rv3152at 3520.040 kb on + strand, within Rv3152at 3520.065 kb on + strand, within Rv3152at 3520.066 kb on + strand, within Rv3152

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Asparagine (C)
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3,515,871 + Rv3150 0.34 -1.3
3,515,952 + Rv3150 0.40 -0.7
3,516,168 + Rv3150 0.57 -1.6
3,516,168 + Rv3150 0.57 -3.3
3,516,224 + Rv3150 0.61 -1.4
3,516,453 + Rv3150 0.78 -1.6
3,516,512 + Rv3150 0.82 -1.8
3,516,519 + Rv3150 0.83 +0.1
3,516,520 - Rv3150 0.83 -2.0
3,517,596 - Rv3151 0.35 -1.2
3,518,018 + Rv3151 0.53 -1.6
3,518,555 - Rv3151 0.75 -1.5
3,518,555 - Rv3151 0.75 -1.4
3,518,644 + Rv3151 0.78 -2.3
3,518,921 + Rv3151 0.90 -1.1
3,518,921 + Rv3151 0.90 -0.9
3,518,922 - Rv3151 0.90 -1.6
3,518,922 - Rv3151 0.90 -0.8
3,518,952 + -1.2
3,519,247 + +0.3
3,519,247 + -0.5
3,519,247 + +0.2
3,519,628 + Rv3152 0.28 -0.4
3,519,682 + Rv3152 0.32 -0.9
3,519,685 - Rv3152 0.33 -1.5
3,519,769 - Rv3152 0.39 -1.0
3,519,897 + Rv3152 0.50 -1.7
3,519,898 - Rv3152 0.50 -1.1
3,519,898 - Rv3152 0.50 -0.0
3,519,898 - Rv3152 0.50 -2.0
3,519,906 + Rv3152 0.51 -2.4
3,520,026 + Rv3152 0.60 -1.2
3,520,035 - Rv3152 0.61 -1.2
3,520,040 + Rv3152 0.61 +0.1
3,520,065 + Rv3152 0.64 -1.4
3,520,066 + Rv3152 0.64 -1.5

Or see this region's nucleotide sequence