Experiment: L-Asparagine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv2492 and Rv2493 are separated by 52 nucleotides Rv2493 and Rv2494 are separated by 5 nucleotides Rv2494 and Rv2495c are separated by 22 nucleotides Rv2495c and Rv2496c overlap by 4 nucleotides
Rv2492: Rv2492 - Hypothetical protein, at 2,807,278 to 2,808,030
Rv2492
Rv2493: Rv2493 - Possible antitoxin VapB38, at 2,808,083 to 2,808,304
Rv2493
Rv2494: Rv2494 - Possible toxin VapC38. Contains PIN domain., at 2,808,310 to 2,808,735
Rv2494
Rv2495c: Rv2495c - Probable branched-chain keto acid dehydrogenase E2 component BkdC, at 2,808,758 to 2,809,939
Rv2495c
Rv2496c: Rv2496c - Probable branched-chain keto acid dehydrogenase E1 component, beta subunit BkdB, at 2,809,936 to 2,810,982
Rv2496c
Position (kb)
2808
2809
2810 Strain fitness (log2 ratio)
-2
-1
0
1 at 2807.944 kb on - strand, within Rv2492 at 2808.029 kb on - strand at 2808.040 kb on + strand at 2810.253 kb on + strand, within Rv2496c at 2810.408 kb on + strand, within Rv2496c at 2810.510 kb on + strand, within Rv2496c at 2810.510 kb on + strand, within Rv2496c at 2810.550 kb on + strand, within Rv2496c at 2810.701 kb on + strand, within Rv2496c at 2810.701 kb on + strand, within Rv2496c at 2810.779 kb on - strand, within Rv2496c at 2810.874 kb on - strand, within Rv2496c
Per-strain Table
Position Strand Gene LocusTag Fraction L-Asparagine (C) remove 2,807,944 - Rv2492 0.88 -1.1 2,808,029 - -0.3 2,808,040 + +0.1 2,810,253 + Rv2496c 0.30 -0.7 2,810,408 + Rv2496c 0.45 -2.2 2,810,510 + Rv2496c 0.55 -2.0 2,810,510 + Rv2496c 0.55 +1.6 2,810,550 + Rv2496c 0.59 -1.7 2,810,701 + Rv2496c 0.73 -1.0 2,810,701 + Rv2496c 0.73 -0.0 2,810,779 - Rv2496c 0.81 -1.0 2,810,874 - Rv2496c 0.90 -0.6
Or see this region's nucleotide sequence