Experiment: L-Asparagine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0281 and Rv0282 are separated by 223 nucleotides Rv0282 and Rv0283 overlap by 4 nucleotides
Rv0281: Rv0281 - Possible S-adenosylmethionine-dependent methyltransferase, at 340,998 to 341,906
Rv0281
Rv0282: Rv0282 - ESX conserved component EccA3. ESX-3 type VII secretion system protein., at 342,130 to 344,025
Rv0282
Rv0283: Rv0283 - ESX conserved component EccB3. ESX-3 type VII secretion system protein. Possible membrane protein., at 344,022 to 345,638
Rv0283
Position (kb) 342
343
344
345 Strain fitness (log2 ratio) -2
-1
0
1 at 341.247 kb on + strand, within Rv0281 at 341.248 kb on - strand, within Rv0281 at 341.248 kb on - strand, within Rv0281 at 341.260 kb on - strand, within Rv0281 at 341.260 kb on - strand, within Rv0281 at 341.550 kb on + strand, within Rv0281 at 341.666 kb on + strand, within Rv0281 at 341.734 kb on - strand, within Rv0281 at 341.812 kb on - strand, within Rv0281 at 341.968 kb on + strand at 341.969 kb on - strand at 341.988 kb on - strand at 342.004 kb on - strand at 342.032 kb on - strand at 342.032 kb on - strand at 342.140 kb on + strand at 342.215 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Asparagine (C) remove 341,247 + Rv0281 0.27 -0.2 341,248 - Rv0281 0.28 -1.7 341,248 - Rv0281 0.28 +0.2 341,260 - Rv0281 0.29 +1.3 341,260 - Rv0281 0.29 -1.9 341,550 + Rv0281 0.61 -0.3 341,666 + Rv0281 0.73 -1.0 341,734 - Rv0281 0.81 -0.5 341,812 - Rv0281 0.90 -0.5 341,968 + +0.4 341,969 - +0.4 341,988 - -1.1 342,004 - -0.4 342,032 - -0.4 342,032 - -0.8 342,140 + -0.3 342,215 + -0.2
Or see this region's nucleotide sequence