Experiment: pyruvate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv2668 and Rv2669 are separated by 28 nucleotides Rv2669 and Rv2670c overlap by 23 nucleotides Rv2670c and Rv2671 overlap by 2 nucleotides Rv2671 and Rv2672 are separated by 66 nucleotides
Rv2668: Rv2668 - Possible exported alanine and valine rich protein, at 2,984,733 to 2,985,254
Rv2668
Rv2669: Rv2669 - GCN5-related N-acetyltransferase, at 2,985,283 to 2,985,753
Rv2669
Rv2670c: Rv2670c - Conserved hypothetical protein, at 2,985,731 to 2,986,840
Rv2670c
Rv2671: Rv2671 - Possible bifunctional enzyme riboflavin biosynthesis protein RibD: diaminohydroxyphosphoribosylaminopyrimidine deaminase (riboflavin-specific deaminase) + 5-amino-6-(5-phosphoribosylamino)uracil reductase (HTP reductase), at 2,986,839 to 2,987,615
Rv2671
Rv2672: Rv2672 - Possible secreted protease, at 2,987,682 to 2,989,268
Rv2672
Position (kb)
2985
2986
2987 Strain fitness (log2 ratio)
-1
0
1 at 2984.875 kb on - strand, within Rv2668 at 2984.934 kb on + strand, within Rv2668 at 2984.935 kb on - strand, within Rv2668 at 2984.936 kb on + strand, within Rv2668 at 2985.082 kb on - strand, within Rv2668 at 2985.750 kb on - strand at 2985.796 kb on - strand at 2985.990 kb on + strand, within Rv2670c at 2986.347 kb on - strand, within Rv2670c at 2986.375 kb on + strand, within Rv2670c at 2986.479 kb on + strand, within Rv2670c at 2986.479 kb on + strand, within Rv2670c at 2986.480 kb on - strand, within Rv2670c at 2986.902 kb on + strand at 2986.903 kb on - strand at 2986.933 kb on - strand, within Rv2671 at 2987.115 kb on + strand, within Rv2671 at 2987.115 kb on + strand, within Rv2671 at 2987.411 kb on + strand, within Rv2671 at 2987.491 kb on - strand, within Rv2671 at 2987.586 kb on + strand at 2987.592 kb on + strand at 2987.593 kb on - strand at 2987.593 kb on - strand at 2987.601 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction pyruvate (C) remove 2,984,875 - Rv2668 0.27 -0.0 2,984,934 + Rv2668 0.39 -0.0 2,984,935 - Rv2668 0.39 -0.8 2,984,936 + Rv2668 0.39 -0.5 2,985,082 - Rv2668 0.67 -0.1 2,985,750 - -0.1 2,985,796 - -0.4 2,985,990 + Rv2670c 0.23 +0.7 2,986,347 - Rv2670c 0.55 -0.1 2,986,375 + Rv2670c 0.58 -0.1 2,986,479 + Rv2670c 0.67 +0.6 2,986,479 + Rv2670c 0.67 +0.0 2,986,480 - Rv2670c 0.67 +0.2 2,986,902 + -0.2 2,986,903 - -0.4 2,986,933 - Rv2671 0.12 +0.2 2,987,115 + Rv2671 0.36 -0.6 2,987,115 + Rv2671 0.36 -0.5 2,987,411 + Rv2671 0.74 -0.6 2,987,491 - Rv2671 0.84 -0.3 2,987,586 + -0.5 2,987,592 + +0.0 2,987,593 - -0.2 2,987,593 - -0.4 2,987,601 + -0.5
Or see this region's nucleotide sequence