Experiment: pyruvate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0888 and Rv0889c are separated by 34 nucleotides Rv0889c and Rv0890c are separated by 86 nucleotides
Rv0888: Rv0888 - Probable exported protein, at 987,233 to 988,705
Rv0888
Rv0889c: Rv0889c - Probable citrate synthase II CitA, at 988,740 to 989,861
Rv0889c
Rv0890c: Rv0890c - Probable transcriptional regulatory protein (probably LuxR-family), at 989,948 to 992,596
Rv0890c
Position (kb) 988
989
990 Strain fitness (log2 ratio) -1
0
1
2 at 987.920 kb on + strand, within Rv0888 at 987.921 kb on - strand, within Rv0888 at 987.921 kb on - strand, within Rv0888 at 988.011 kb on - strand, within Rv0888 at 988.011 kb on - strand, within Rv0888 at 988.014 kb on - strand, within Rv0888 at 988.014 kb on - strand, within Rv0888 at 988.014 kb on - strand, within Rv0888 at 988.044 kb on - strand, within Rv0888 at 988.102 kb on + strand, within Rv0888 at 988.117 kb on + strand, within Rv0888 at 988.193 kb on + strand, within Rv0888 at 988.193 kb on + strand, within Rv0888 at 988.193 kb on + strand, within Rv0888 at 988.193 kb on + strand, within Rv0888 at 988.194 kb on - strand, within Rv0888 at 988.194 kb on - strand, within Rv0888 at 988.194 kb on - strand, within Rv0888 at 988.194 kb on - strand, within Rv0888 at 988.194 kb on - strand, within Rv0888 at 988.239 kb on - strand, within Rv0888 at 988.280 kb on + strand, within Rv0888 at 988.287 kb on + strand, within Rv0888 at 988.287 kb on + strand, within Rv0888 at 988.288 kb on - strand, within Rv0888 at 988.288 kb on - strand, within Rv0888 at 988.291 kb on + strand, within Rv0888 at 988.291 kb on + strand, within Rv0888 at 988.292 kb on - strand, within Rv0888 at 988.292 kb on - strand, within Rv0888 at 988.292 kb on - strand, within Rv0888 at 988.292 kb on - strand, within Rv0888 at 988.346 kb on + strand, within Rv0888 at 988.346 kb on + strand, within Rv0888 at 988.347 kb on - strand, within Rv0888 at 988.347 kb on - strand, within Rv0888 at 988.347 kb on - strand, within Rv0888 at 988.477 kb on - strand, within Rv0888 at 988.676 kb on + strand at 988.699 kb on - strand at 988.807 kb on + strand at 988.807 kb on + strand at 988.808 kb on - strand at 988.808 kb on - strand at 989.104 kb on + strand, within Rv0889c at 989.470 kb on + strand, within Rv0889c at 989.470 kb on + strand, within Rv0889c at 989.498 kb on - strand, within Rv0889c at 989.733 kb on + strand, within Rv0889c at 989.862 kb on - strand at 989.898 kb on - strand at 989.982 kb on - strand at 989.982 kb on - strand at 989.990 kb on + strand at 990.189 kb on + strand at 990.189 kb on + strand at 990.189 kb on + strand at 990.189 kb on + strand at 990.190 kb on - strand at 990.438 kb on + strand, within Rv0890c at 990.677 kb on - strand, within Rv0890c at 990.744 kb on + strand, within Rv0890c at 990.744 kb on + strand, within Rv0890c at 990.744 kb on + strand, within Rv0890c at 990.744 kb on + strand, within Rv0890c at 990.745 kb on - strand, within Rv0890c at 990.745 kb on - strand, within Rv0890c at 990.774 kb on + strand, within Rv0890c at 990.774 kb on + strand, within Rv0890c at 990.819 kb on - strand, within Rv0890c at 990.846 kb on + strand, within Rv0890c
Per-strain Table
Position Strand Gene LocusTag Fraction pyruvate (C) remove 987,920 + Rv0888 0.47 -0.1 987,921 - Rv0888 0.47 -0.3 987,921 - Rv0888 0.47 -0.7 988,011 - Rv0888 0.53 +1.0 988,011 - Rv0888 0.53 -0.2 988,014 - Rv0888 0.53 +0.4 988,014 - Rv0888 0.53 -0.2 988,014 - Rv0888 0.53 -0.1 988,044 - Rv0888 0.55 -0.3 988,102 + Rv0888 0.59 -0.6 988,117 + Rv0888 0.60 -0.2 988,193 + Rv0888 0.65 -0.2 988,193 + Rv0888 0.65 +0.1 988,193 + Rv0888 0.65 -0.4 988,193 + Rv0888 0.65 -0.8 988,194 - Rv0888 0.65 +0.2 988,194 - Rv0888 0.65 -0.7 988,194 - Rv0888 0.65 -0.8 988,194 - Rv0888 0.65 +0.1 988,194 - Rv0888 0.65 +1.6 988,239 - Rv0888 0.68 -0.1 988,280 + Rv0888 0.71 +0.1 988,287 + Rv0888 0.72 -1.4 988,287 + Rv0888 0.72 +0.3 988,288 - Rv0888 0.72 +0.1 988,288 - Rv0888 0.72 -1.2 988,291 + Rv0888 0.72 -0.2 988,291 + Rv0888 0.72 +0.3 988,292 - Rv0888 0.72 +0.9 988,292 - Rv0888 0.72 -0.5 988,292 - Rv0888 0.72 -0.3 988,292 - Rv0888 0.72 -0.3 988,346 + Rv0888 0.76 +0.1 988,346 + Rv0888 0.76 +1.1 988,347 - Rv0888 0.76 -0.0 988,347 - Rv0888 0.76 -0.4 988,347 - Rv0888 0.76 -0.6 988,477 - Rv0888 0.84 -1.1 988,676 + -0.0 988,699 - +0.2 988,807 + +0.4 988,807 + -0.1 988,808 - +0.2 988,808 - +2.1 989,104 + Rv0889c 0.32 -0.1 989,470 + Rv0889c 0.65 +0.0 989,470 + Rv0889c 0.65 +1.0 989,498 - Rv0889c 0.68 +0.9 989,733 + Rv0889c 0.89 +0.3 989,862 - -0.0 989,898 - +0.6 989,982 - -1.2 989,982 - -0.0 989,990 + -1.6 990,189 + +0.6 990,189 + +0.1 990,189 + -0.1 990,189 + -0.3 990,190 - +0.6 990,438 + Rv0890c 0.18 +0.3 990,677 - Rv0890c 0.28 -0.3 990,744 + Rv0890c 0.30 -0.6 990,744 + Rv0890c 0.30 -0.3 990,744 + Rv0890c 0.30 -0.3 990,744 + Rv0890c 0.30 -0.2 990,745 - Rv0890c 0.30 -0.2 990,745 - Rv0890c 0.30 -0.3 990,774 + Rv0890c 0.31 -0.1 990,774 + Rv0890c 0.31 +0.3 990,819 - Rv0890c 0.33 -0.3 990,846 + Rv0890c 0.34 -0.2
Or see this region's nucleotide sequence