Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1690

Experiment: MoLS4 with L-Methionine & L-Threonine (10/10 mM) as nutrient

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU1688 and DVU1690 are separated by 567 nucleotidesDVU1690 and DVU1692 are separated by 299 nucleotidesDVU1692 and gltX-1 are separated by 170 nucleotides DVU1688: DVU1688 - 1-acyl-sn-glycerol-3-phosphate acyltransferase, putative (TIGR), at 1,766,799 to 1,767,608 DVU1688 DVU1690: DVU1690 - transcriptional regulator, TetR family (TIGR), at 1,768,176 to 1,768,745 DVU1690 DVU1692: DVU1692 - hypothetical protein (TIGR), at 1,769,045 to 1,769,440 DVU1692 DVU1693: gltX-1 - glutamyl-tRNA synthetase (TIGR), at 1,769,611 to 1,770,585 gltX-1 Position (kb) 1768 1769Strain fitness (log2 ratio) -2 -1 0 1at 1768.057 kb on - strandat 1768.085 kb on - strandat 1768.127 kb on - strandat 1768.151 kb on - strandat 1768.279 kb on + strand, within DVU1690at 1768.344 kb on - strand, within DVU1690at 1768.410 kb on + strand, within DVU1690at 1768.744 kb on + strandat 1768.763 kb on + strandat 1768.870 kb on + strandat 1768.878 kb on - strandat 1768.943 kb on - strandat 1768.951 kb on - strandat 1769.006 kb on + strandat 1769.351 kb on - strand, within DVU1692at 1769.392 kb on - strand, within DVU1692at 1769.458 kb on - strandat 1769.487 kb on + strandat 1769.487 kb on + strandat 1769.495 kb on - strandat 1769.618 kb on + strandat 1769.626 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Methionine & L-Threonine (10/10 mM) as nutrient
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1,768,057 - -0.2
1,768,085 - -0.5
1,768,127 - -0.7
1,768,151 - -0.7
1,768,279 + DVU1690 0.18 -1.3
1,768,344 - DVU1690 0.29 -1.6
1,768,410 + DVU1690 0.41 -0.8
1,768,744 + -1.1
1,768,763 + -0.4
1,768,870 + -1.5
1,768,878 - -1.9
1,768,943 - -0.8
1,768,951 - -0.0
1,769,006 + -0.5
1,769,351 - DVU1692 0.77 -0.9
1,769,392 - DVU1692 0.88 -1.3
1,769,458 - +0.7
1,769,487 + -0.6
1,769,487 + -0.1
1,769,495 - +0.3
1,769,618 + -0.1
1,769,626 - -0.5

Or see this region's nucleotide sequence