Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1520

Experiment: MoLS4 with L-Methionine & L-Threonine (10/10 mM) as nutrient

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU1518 and DVU1519 are separated by 56 nucleotidesDVU1519 and DVU1520 are separated by 57 nucleotidesDVU1520 and DVU1521 overlap by 11 nucleotidesDVU1521 and DVU1522 are separated by 429 nucleotides DVU1518: DVU1518 - transcriptional regulator cI, truncation (TIGR), at 1,588,107 to 1,588,397 DVU1518 DVU1519: DVU1519 - transcriptional regulator, putative (TIGR), at 1,588,454 to 1,589,107 DVU1519 DVU1520: DVU1520 - hypothetical protein (TIGR), at 1,589,165 to 1,590,151 DVU1520 DVU1521: DVU1521 - hypothetical protein (TIGR), at 1,590,141 to 1,590,320 DVU1521 DVU1522: DVU1522 - hypothetical protein (TIGR), at 1,590,750 to 1,591,145 DVU1522 Position (kb) 1589 1590 1591Strain fitness (log2 ratio) -2 -1 0 1at 1588.166 kb on + strand, within DVU1518at 1588.195 kb on - strand, within DVU1518at 1588.210 kb on - strand, within DVU1518at 1589.311 kb on + strand, within DVU1520at 1589.963 kb on + strand, within DVU1520at 1590.162 kb on + strand, within DVU1521at 1590.493 kb on + strandat 1590.501 kb on + strandat 1590.509 kb on - strandat 1590.524 kb on + strandat 1590.535 kb on - strandat 1590.726 kb on - strandat 1590.768 kb on + strandat 1590.768 kb on + strandat 1590.786 kb on - strandat 1590.792 kb on + strand, within DVU1522at 1590.829 kb on - strand, within DVU1522at 1590.869 kb on - strand, within DVU1522at 1590.875 kb on - strand, within DVU1522at 1590.896 kb on - strand, within DVU1522at 1590.998 kb on + strand, within DVU1522at 1591.006 kb on - strand, within DVU1522at 1591.044 kb on - strand, within DVU1522at 1591.066 kb on - strand, within DVU1522at 1591.091 kb on + strand, within DVU1522at 1591.147 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Methionine & L-Threonine (10/10 mM) as nutrient
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1,588,166 + DVU1518 0.20 -0.2
1,588,195 - DVU1518 0.30 -0.1
1,588,210 - DVU1518 0.35 -0.1
1,589,311 + DVU1520 0.15 -0.2
1,589,963 + DVU1520 0.81 -0.6
1,590,162 + DVU1521 0.12 -0.8
1,590,493 + +0.2
1,590,501 + +0.9
1,590,509 - +0.4
1,590,524 + -0.1
1,590,535 - -0.9
1,590,726 - +0.2
1,590,768 + -0.9
1,590,768 + +0.1
1,590,786 - -1.8
1,590,792 + DVU1522 0.11 +0.0
1,590,829 - DVU1522 0.20 +0.7
1,590,869 - DVU1522 0.30 -0.3
1,590,875 - DVU1522 0.32 -1.3
1,590,896 - DVU1522 0.37 +0.2
1,590,998 + DVU1522 0.63 +0.3
1,591,006 - DVU1522 0.65 -0.9
1,591,044 - DVU1522 0.74 +0.3
1,591,066 - DVU1522 0.80 -0.1
1,591,091 + DVU1522 0.86 +0.1
1,591,147 + -1.0

Or see this region's nucleotide sequence